Dear all,<div><br></div><div>I got the "wx._core.PyDeadObjectError" when using Phenix 1.4-3 GUI under OS X 10.5.6 for a SAD run. The program stuck at the blue window after the first step of AutoSol. Attached is the log file. Could anyone help me find out what is wrong? Thanks very much in advance!</div>
<div>Cheers,</div><div><br></div><div>Tiancen Hu</div><div>Shanghai Institute of Materia Medica</div><div>Chinese Academy of Sciences</div><div><div><br></div><div>"</div><div>PHENIX distribution located in /usr/local/phenix-1.4-3/phenix</div>
<div><br></div><div><br></div><div><span class="Apple-tab-span" style="white-space:pre"> </span>Project Details</div><div><span class="Apple-tab-span" style="white-space:pre"> </span>Project Name: phenix2</div><div><span class="Apple-tab-span" style="white-space:pre"> </span>Date Stamp : Thu Feb 12 01:08:25 2009</div>
<div><span class="Apple-tab-span" style="white-space:pre"> </span>Machine : htcdemacbook-pro.local</div><div><span class="Apple-tab-span" style="white-space:pre"> </span>Directory : /Users/htc/xtal/subjects/cd147se/phenix2</div>
<div><br></div><div><span class="Apple-tab-span" style="white-space:pre"> </span>PDS Server Details</div><div><span class="Apple-tab-span" style="white-space:pre"> </span>User : htc</div><div><span class="Apple-tab-span" style="white-space:pre"> </span>Machine : 192.168.1.3</div>
<div><span class="Apple-tab-span" style="white-space:pre"> </span>Directory : /Users/htc/xtal/subjects/cd147se/phenix2</div><div><span class="Apple-tab-span" style="white-space:pre"> </span>Port : 47702</div><div><span class="Apple-tab-span" style="white-space:pre"> </span>PID : 4863</div>
<div><br></div><div><br></div><div>WIZARD: AutoSol</div><div><br></div><div>************************************************************</div><div> PHENIX AutoSol Thu Feb 12 01:19:23 2009</div><div>************************************************************</div>
<div><br></div><div>PHENIX VERSION: 1.4 of 08-12-2008</div><div>PHENIX RELEASE_TAG : 3</div><div>PHENIX MTYPE : mac-intel-osx</div><div>PHENIX MVERSION : osx-10.5.6</div><div><br></div><div>LOCAL INIT: Readdatabase: True SetUpInputs: True</div>
<div>AutoSol </div><div> Thu Feb 12 01:19:23 2009</div><div><br></div><div>Gathering defaults from ['AutoBuild', 'ImportRawData', 'LigandFit', 'AutoMR']</div><div>WORKDIR: /Users/htc/xtal/subjects/cd147se/phenix2</div>
<div>Checking for KnownWizards: ['AutoSol', 'AutoBuild', 'ImportRawData']</div><div>Running start first time through</div><div>Setting default value of 2.5 for resolution</div><div>Setting default value of 0.5 for solvent_fraction</div>
<div>Setting default value of 200 for residues</div><div>Guessing sequence file is cd147_21a.seq</div><div>application method: AutoSol_start</div><div>Getting inputs on first pass...</div><div>SUMMARY Input files dataset #1</div>
<div>amom360_p41212_31A.sca</div><div>Traceback (most recent call last):</div><div> File "/usr/local/phenix-1.4-3/phenix/wxGUI/wxtask.py", line 522, in OnGoButton</div><div> try: self.parent.OnGo()</div><div>
File "/usr/local/phenix-1.4-3/phenix/wxGUI/Dialogs.py", line 470, in OnGo</div><div> gp.RunStrategy()</div><div> File "/usr/local/phenix-1.4-3/phenix/wxGUI/BMPTaskCanvas.py", line 1170, in RunStrategy</div>
<div> self.RunRemotely()</div><div> File "/usr/local/phenix-1.4-3/phenix/wxGUI/BMPTaskCanvas.py", line 1380, in RunRemotely</div><div> remote = frame.RemoteHostName,</div><div> File "/usr/local/phenix-1.4-3/phenix/phenix/pds_server/StrategyUtils.py", line 124, in RunStrategy</div>
<div> LastStrategy</div><div> File "/usr/local/phenix-1.4-3/phenix/phenix/server/PhenixClient.py", line 87, in StartProcessMaster</div><div> return self._remote_call('StartProcessMaster',arg,kw)</div>
<div> File "/usr/local/phenix-1.4-3/phenix/phenix/server/PhenixClient.py", line 466, in _remote_call</div><div> raise result</div><div>AssertionError: No user for ssh to machine 192.168.1.3</div><div>Traceback (most recent call last):</div>
<div> File "/usr/local/phenix-1.4-3/phenix/wxGUI/wxtask.py", line 892, in OnTableKillFocus</div><div> self.OnTableTextEnter(event)</div><div> File "/usr/local/phenix-1.4-3/phenix/wxGUI/wxtask.py", line 861, in OnTableTextEnter</div>
<div> (grid, cbox, ctrl, t_param, ir, ic) = self.get_event_table(event)</div><div> File "/usr/local/phenix-1.4-3/phenix/wxGUI/wxtask.py", line 1204, in get_event_table</div><div> (ctrl, group_list, key_list, winszr) = self.get_ctrl_context(evtwin)</div>
<div> File "/usr/local/phenix-1.4-3/phenix/wxGUI/wxtask.py", line 1173, in get_ctrl_context</div><div> result = self.RootWinSzr.FindInParentSizer(ctrl)</div><div> File "/usr/local/phenix-1.4-3/phenix/wxGUI/wxtask.py", line 159, in FindInParentSizer</div>
<div> result = child.FindInParentSizer(window, child_groups, child_keys)</div><div> File "/usr/local/phenix-1.4-3/phenix/wxGUI/wxtask.py", line 143, in FindInParentSizer</div><div> if (child.GetId() == SearchWinId):</div>
<div> File "/usr/local/phenix-1.4-3/build/mac-intel-osx/base/Python.framework/Versions/2.6/lib/python2.6/site-packages/wx-2.8-mac-ansi/wx/_core.py", line 14522, in __getattr__</div><div> raise PyDeadObjectError(self.attrStr % self._name)</div>
<div>wx._core.PyDeadObjectError: The C++ part of the Panel object has been deleted, attribute access no longer allowed.</div><div>"</div></div>