<html><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Hi Thomas,<div><br></div><div>I'm sorry for this problem, and also for the opaqueness of some of the error messages you can get from autobuild because it is running jobs as sub-processes.</div><div><br></div><div>This one I have not seen, but it probably has to do with the contents of the file:</div><div><br></div><div><span class="Apple-tab-span" style="white-space:pre"> </span>/home/thomas/phenix_omitmap/AutoBuild_run_1_/TEMP0/RUN_FILE_1 </div><div><br></div><div>which is a command file to run a sub-process.</div><div><br></div><div>Here are some things to try:</div><div><br></div><div>Run this file directly like this:</div><div><br></div><div><span class="Apple-tab-span" style="white-space:pre"> </span>cd /home/thomas/phenix_omitmap/AutoBuild_run_1_/TEMP0/</div><div><span class="Apple-tab-span" style="white-space:pre"> </span>./RUN_FILE_1</div><div><br></div><div>Does it run? (It should bomb right away if it is going to fail). If it runs...then there is something really weird because it didn't run when called from autobuild.</div><div><br></div><div>If it doesn't run...then let's see why. Edit the first line of the file from </div><div><br></div><div><span class="Apple-tab-span" style="white-space:pre"> </span>#!/bin/csh -f</div><div><br></div><div>to add "v" for verbose:</div><div><br></div><div><span class="Apple-tab-span" style="white-space:pre"> </span>#!/bin/csh -fv</div><div><br></div><div>Now run it again....what is the printout? It should print out everything it is about to do, then do it, so the last thing printed out is what failed. Does this give any hints?</div><div><br></div><div>If that doesn't provide something obvious to do, then if you can send me the RUN_FILE_1 file I can have a look.</div><div><br></div><div>All the best,</div><div>Tom T</div><div><br></div><div><br></div><div><div apple-content-edited="true"> <span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div><div><div><div><div><br><br></div></div></div></div></div></div></span></div><div><div>On Feb 25, 2009, at 10:19 PM, Jhon Thomas wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite">Hello all<br><br>There is a problem with running phenix.autobuild.<br><br>Failed to carry out AutoBuild_parallel_omit:<br><br>child process stderr output:<br> command: 'csh /home/thomas/phenix_omitmap/AutoBuild_run_1_/TEMP0/RUN_FILE_1'<br> Badly placed ()'s.<br><br>What could be solution.<br><br>Thanks<br><br>Thomas<br> _______________________________________________<br>phenixbb mailing list<br><a href="mailto:phenixbb@phenix-online.org">phenixbb@phenix-online.org</a><br>http://www.phenix-online.org/mailman/listinfo/phenixbb<br></blockquote></div><br></div></body></html>