Thanks for the e-mail!<br><br>I think I've figured out the problem. I had been using the GUI to set "input_map_file" and "input_map_labels" rather than using "Optional map coefficient file name". It wasn't reading in the solvent flattened data correctly (and thus not setting "phases_from_resolve").<br>
<br>In addition there seems to be a bug in how the optional map file labels are read, since:<br>temporary.com:LABIN FP=PHIdm PHIB=FOMdm FOM=Fdm<br><br>Is there a fix for this (version 1.3), as I've flipped them round and still get them mis-assigned?<br>
<br>Cheers!<br><br><div class="gmail_quote">On Fri, Feb 27, 2009 at 7:49 PM, Thomas C. Terwilliger <span dir="ltr"><<a href="mailto:terwilliger@lanl.gov">terwilliger@lanl.gov</a>></span> wrote:<br><blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
Hi Mo,<br>
<br>
There isn't any place in the AutoBuild GUI specifically for<br>
"phases_from_resolve". �If you really want to set this parameter you can<br>
go to the "uncommon inputs" window and set "resolve_command" to<br>
"phases_from_resolve".<br>
<br>
I think that you don't want to do this, however. �I am assuming that this<br>
means that you are using a density-modified map as input to AutoBuild with<br>
data=my_density_modified_map.mtz.<br>
<br>
What you want to do instead is say (or set in the GUI):<br>
<br>
data=my_experimental_fobs_and_phases.mtz \<br>
input_map_file=my_density_modified_map.mtz<br>
<br>
and then AutoBuild will start from your density modified map, but it will<br>
use experimental phase information as the prior phase information. It will<br>
also automatically set the parameter "phases_from_resolve" so that that<br>
you do not have to.<br>
<br>
I hope that helps!<br>
-Tom T<br>
<div><div></div><div class="Wj3C7c"><br>
<br>
<br>
Hi all,<br>
<br>
Can someone tell me where in the AutoBuild GUI I can set<br>
"phases_from_resolve"? I've looked for it in the "set variable" section,<br>
but<br>
it's not listed.<br>
<br>
Thanks!<br>
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