Hi Pavel,<br><br>I'd like to go with option 2. I am not in a hurry, but sometime next week I would like to use the update if possible.<br><br>thanks!<br><br>Raj<br><br><div class="gmail_quote">On Tue, Apr 28, 2009 at 1:44 AM, Stephen Graham <span dir="ltr"><<a href="mailto:stepheng@strubi.ox.ac.uk">stepheng@strubi.ox.ac.uk</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">Hi Pavel,<br>
<br>
Can I please cast my vote for option 2 ("add this option to PHENIX").<br>
This is something I find myself wanting to do fairly often (it<br>
accelerates the disappointment of finding out your active site is<br>
empty *again* : )<br>
<br>
Cheers,<br>
<br>
Stephen<br>
<br>
2009/4/28 Pavel Afonine <<a href="mailto:PAfonine@lbl.gov">PAfonine@lbl.gov</a>>:<br>
<div><div></div><div class="h5">> Hi Charlie,<br>
><br>
> there is no specific tool in PHENIX to do so. However, I remember I wrote<br>
> such script using PHENIX components for someone a while ago...<br>
><br>
> Here are the options:<br>
><br>
> - I can just sent you that script, where you will have to put in your file<br>
> names, Fobs labels, etc, and run it as:<br>
> phenix.python script.py<br>
><br>
> - I can add this option to PHENIX, so it will be something like:<br>
> "phenix.fo_minus_fo_map". In this case it will take a day or two before it<br>
> appears in a nightly build and you can download the updated version of<br>
> PHENIX where it will be available.<br>
><br>
> - You can send me the data and I compute this map for you. I think I will<br>
> add this option to PHENIX anyway.<br>
><br>
> Once it's available, it would be helpful if you me some feedback, like tell<br>
> if it works as expected, etc.<br>
><br>
> Pavel.<br>
><br>
><br>
><br>
> On 4/27/09 6:15 PM, chandra bose wrote:<br>
><br>
> Hi,<br>
><br>
> I was wondering how to make fobs-fobs difference electron density maps with<br>
> phenix using data sets from two crystals.<br>
> I know cns has a script for this...<br>
><br>
> thanks<br>
> Charlie<br>
><br>
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<br>
<br>
<br>
</div></div><font color="#888888">--<br>
Dr Stephen Graham<br>
Division of Structural Biology<br>
Wellcome Trust Centre for Human Genetics<br>
Roosevelt Drive<br>
Oxford OX3 7BN<br>
United Kingdom<br>
Phone: +44 1865 287 549<br>
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