<html><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Hi Pavel,<div>I'm having trouble using your tool...Can you unpack</div><div><br></div><div>~terwill/fofomap.tgz</div><div><br></div><div>and try:</div><div><br></div><div><div>ls</div><div>coords.pdb<span class="Apple-tab-span" style="white-space:pre"> </span>native.mtz<span class="Apple-tab-span" style="white-space:pre"> </span>native.sca<span class="Apple-tab-span" style="white-space:pre"> </span>peak.mtz<span class="Apple-tab-span" style="white-space:pre"> </span>peak.sca</div><div>[ttmbpro:transfer/test/testit] terwill% phenix.fobs_minus_fobs_map peak.mtz native.mtz phase_source=coords.pdb</div><div><br></div><div>========================== phenix.fobs_minus_fobs_map =========================</div><div><br></div><div>Command line arguments: </div><div>['peak.mtz', 'native.mtz', 'phase_source=coords.pdb']</div><div><br></div><div>Sorry: No PDB file found.</div><div><br></div><div><br></div><div>Also:</div><div><br></div><div><div> phenix.fobs_minus_fobs_map peak.sca native.sca coords.pdb</div><div><br></div><div>========================== phenix.fobs_minus_fobs_map =========================</div><div><br></div><div>Command line arguments: </div><div>['peak.sca', 'native.sca', 'coords.pdb']</div><div><br></div><div>*** Parameters:</div><div>f_obs_1_file_name = None</div><div>f_obs_1_label = None</div><div>f_obs_2_file_name = None</div><div>f_obs_2_label = None</div><div>high_resolution = None</div><div>low_resolution = None</div><div>sigma_cutoff = None</div><div>phase_source = None</div><div>scattering_table = *xray neutron</div><div><br></div><div>Sorry: No reflection data file found.</div><div><br></div><div><br></div><div>Thanks!</div><div>-Tom T</div><div><br></div></div><div><br></div></div><div><div apple-content-edited="true"> <span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div><div><div><div><div><br>Thomas C. Terwilliger<br>Mail Stop M888<br>Los Alamos National Laboratory<br>Los Alamos, NM 87545<br><br>Tel: 505-667-0072 email: <a href="mailto:terwilliger@LANL.gov">terwilliger@LANL.gov</a><br>Fax: 505-665-3024 SOLVE web site: <a href="http://solve.lanl.gov">http://solve.lanl.gov</a><br>PHENIX web site: http:<a href="http://www.phenix-online.org">www.phenix-online.org</a><br>ISFI Integrated Center for Structure and Function Innovation web site: <a href="http://techcenter.mbi.ucla.edu">http://techcenter.mbi.ucla.edu</a><br>TB Structural Genomics Consortium web site: <a href="http://www.doe-mbi.ucla.edu/TB">http://www.doe-mbi.ucla.edu/TB</a></div><div>CBSS Center for Bio-Security Science web site: <a href="http://www.lanl.gov/cbss">http://www.lanl.gov/cbss</a><br><br></div></div></div></div><br></div></div></span><br class="Apple-interchange-newline"> </div><br><div><div>On Apr 30, 2009, at 11:39 AM, Pavel Afonine wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 18px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0; ">fobs_minus_fobs_map</span></blockquote></div><br></div></body></html>