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I just realized that you could do it even without using
truncate_to_polyala:<br>
<br>
phenix.pdbtools model.pdb keep="backbone"<br>
<br>
or, equivalently:<br>
<br>
phenix.pdbtools model.pdb remove="sidechain"<br>
<br>
and it works for both: proteins and RNA/DNA. <br>
<br>
Pavel.<br>
<br>
<br>
On 5/13/09 12:43 PM, Francis E Reyes wrote:
<blockquote cite="mid:1CCE4D33-2F55-4774-82F0-46C8D32B43ED@colorado.edu"
type="cite">
<pre wrap="">Though the original question was for protein, is there a mutate to
poly C for RNA as well? :)
It just came to mind right now.
FR
On May 13, 2009, at 1:42 PM, Pavel Afonine wrote:
</pre>
<blockquote type="cite">
<pre wrap="">Hi,
the next nightly build of PHENIX will have this option available from
phenix.pdbtools.
Example:
phenix.pdbtools model.pdb truncate_to_polyala=true
As always, any feedback will be very appreciated.
Pavel.
On 5/7/09 7:01 AM, Francis E Reyes wrote:
</pre>
<blockquote type="cite">
<pre wrap="">Is there an option or a phenix.* utility to mutate a MR model to poly
ALA before the MR is done?
</pre>
</blockquote>
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<pre wrap=""><!---->
---------------------------------------------
Francis Reyes M.Sc.
215 UCB
University of Colorado at Boulder
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