<html><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Hi Katya,<div>I'm sorry for the trouble! Can you first check to make sure you have a recent version of phenix (i.e., in the last few months). There was an earlier version that sometimes had this problem but I think that it should not be happening now. If not, can you download a current nightly build (take one from a few days ago to be safe) and try again?</div><div>If that does not do it, then if you could email me a listing of the autoBuild directories with "ls -lR" and send me the AutoBuild_run_1_/AutoBuild_run_1_1.log file that would be most helpful.</div><div>All the best,</div><div>Tom T<br><div apple-content-edited="true"> <span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div><div><div><div><div><br>Thomas C. Terwilliger<br>Mail Stop M888<br>Los Alamos National Laboratory<br>Los Alamos, NM 87545<br><br>Tel: 505-667-0072 email: <a href="mailto:terwilliger@LANL.gov">terwilliger@LANL.gov</a><br>Fax: 505-665-3024 SOLVE web site: <a href="http://solve.lanl.gov">http://solve.lanl.gov</a><br>PHENIX web site: http:<a href="http://www.phenix-online.org">www.phenix-online.org</a><br>ISFI Integrated Center for Structure and Function Innovation web site: <a href="http://techcenter.mbi.ucla.edu">http://techcenter.mbi.ucla.edu</a><br>TB Structural Genomics Consortium web site: <a href="http://www.doe-mbi.ucla.edu/TB">http://www.doe-mbi.ucla.edu/TB</a></div><div>CBSS Center for Bio-Security Science web site: <a href="http://www.lanl.gov/cbss">http://www.lanl.gov/cbss</a><br><br></div></div></div></div><br></div></div></span><br class="Apple-interchange-newline"> </div><br><div><div>On May 20, 2009, at 11:51 AM, Katya Heldwein wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><div>Hi, I am trying to run Autobuild to generate a very good rebuilt model using<br><br>phenix.autobuild data=data.mtz model=coords.pdb multiple_models=True \<br> include_input_model=True \<br> multiple_models_number=1 n_cycle_rebuild_max=5<br><br>with some modifications.<br><br>When I run it, I get the following error:<br><br>********************************************************************************<br>Failed to carry out AutoBuild_multiple_models:<br><br>[Errno 2] No such file or directory: 'AutoBuild_run_1_/TEMP0/temporary.com'<br>********************************************************************************<br><br>How can I troubleshoot this problem?<br><br>Katya<br><br><br>-- <br>Ekaterina Heldwein, Ph.D.<br>Assistant Professor<br>Department of Molecular Biology and Microbiology<br>Tufts University 136 Harrison Ave<br>Boston, MA 02111<br><br>phone: 617-636-0858<br>fax: 617-636-0337<br>e-mail: <a href="mailto:katya.heldwein@tufts.edu">katya.heldwein@tufts.edu</a><br><br><br><br><br><br><br>_______________________________________________<br>phenixbb mailing list<br><a href="mailto:phenixbb@phenix-online.org">phenixbb@phenix-online.org</a><br>http://www.phenix-online.org/mailman/listinfo/phenixbb<br></div></blockquote></div><br></div></body></html>