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Hi Maia,<br>
<br>
it would be helpful if you can send us the PDB file so we can reproduce
and fix this problem (send it to my address, not to the whole bb).<br>
<br>
Pavel.<br>
<br>
<br>
On 6/10/09 11:06 AM, Maia Cherney wrote:
<blockquote cite="mid:4A2FF628.3080808@ualberta.ca" type="cite">
<pre wrap="">Thank you Francis and Sabine for your help.
phenix.print_sequence worked fine. The only problem I had with one pdb,
for some reason the sequence of each subunit was doubled. There was no
such problem with the pdbset.
Maia
Maia
Francis E Reyes wrote:
</pre>
<blockquote type="cite">
<pre wrap="">phenix.print_sequence
phenix.* has a lot of good utils I didnt know about until I tab
completed it.
FR
On Jun 8, 2009, at 9:17 AM, chern wrote:
</pre>
<blockquote type="cite">
<pre wrap="">Hi everybody,
I am building a model of protein and the sequence has wrong parts. I
want to compare it to the original sequence side-by-side. How can I
extract a one-letter sequence from the pdb file? This information
should be easily generated by auto build. I mean, I give the pdb and
get the fasta format sequence.
Maia
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</blockquote>
<pre wrap="">---------------------------------------------
Francis Reyes M.Sc.
215 UCB
University of Colorado at Boulder
gpg --keyserver pgp.mit.edu --recv-keys 67BA8D5D
8AE2 F2F4 90F7 9640 28BC 686F 78FD 6669 67BA 8D5D
------------------------------------------------------------------------
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<pre wrap=""><!---->
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