<html xmlns:v="urn:schemas-microsoft-com:vml" xmlns:o="urn:schemas-microsoft-com:office:office" xmlns:w="urn:schemas-microsoft-com:office:word" xmlns:m="http://schemas.microsoft.com/office/2004/12/omml" xmlns="http://www.w3.org/TR/REC-html40">

<head>
<meta http-equiv=Content-Type content="text/html; charset=us-ascii">
<meta name=Generator content="Microsoft Word 12 (filtered medium)">
<!--[if !mso]>
<style>
v\:* {behavior:url(#default#VML);}
o\:* {behavior:url(#default#VML);}
w\:* {behavior:url(#default#VML);}
.shape {behavior:url(#default#VML);}
</style>
<![endif]-->
<title>Unable to produce kicked maps</title>
<style>
<!--
 /* Font Definitions */
 @font-face
        {font-family:"Cambria Math";
        panose-1:2 4 5 3 5 4 6 3 2 4;}
@font-face
        {font-family:Calibri;
        panose-1:2 15 5 2 2 2 4 3 2 4;}
@font-face
        {font-family:Tahoma;
        panose-1:2 11 6 4 3 5 4 4 2 4;}
@font-face
        {font-family:Consolas;
        panose-1:2 11 6 9 2 2 4 3 2 4;}
 /* Style Definitions */
 p.MsoNormal, li.MsoNormal, div.MsoNormal
        {margin:0in;
        margin-bottom:.0001pt;
        font-size:12.0pt;
        font-family:"Times New Roman","serif";
        color:black;}
a:link, span.MsoHyperlink
        {mso-style-priority:99;
        color:blue;
        text-decoration:underline;}
a:visited, span.MsoHyperlinkFollowed
        {mso-style-priority:99;
        color:purple;
        text-decoration:underline;}
p
        {mso-style-priority:99;
        mso-margin-top-alt:auto;
        margin-right:0in;
        mso-margin-bottom-alt:auto;
        margin-left:0in;
        font-size:12.0pt;
        font-family:"Times New Roman","serif";
        color:black;}
pre
        {mso-style-priority:99;
        mso-style-link:"HTML Preformatted Char";
        margin:0in;
        margin-bottom:.0001pt;
        font-size:10.0pt;
        font-family:"Courier New";
        color:black;}
span.HTMLPreformattedChar
        {mso-style-name:"HTML Preformatted Char";
        mso-style-priority:99;
        mso-style-link:"HTML Preformatted";
        font-family:Consolas;
        color:black;}
span.EmailStyle20
        {mso-style-type:personal-reply;
        font-family:"Calibri","sans-serif";
        color:#1F497D;}
.MsoChpDefault
        {mso-style-type:export-only;
        font-size:10.0pt;}
@page Section1
        {size:8.5in 11.0in;
        margin:1.0in 1.0in 1.0in 1.0in;}
div.Section1
        {page:Section1;}
-->
</style>
<!--[if gte mso 9]><xml>
 <o:shapedefaults v:ext="edit" spidmax="1026" />
</xml><![endif]--><!--[if gte mso 9]><xml>
 <o:shapelayout v:ext="edit">
  <o:idmap v:ext="edit" data="1" />
 </o:shapelayout></xml><![endif]-->
</head>

<body bgcolor=white lang=EN-US link=blue vlink=purple>

<div class=Section1>

<p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";
color:#1F497D'>Pavel,<o:p></o:p></span></p>

<p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";
color:#1F497D'><o:p>&nbsp;</o:p></span></p>

<p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";
color:#1F497D'>that worked. Thanks<o:p></o:p></span></p>

<p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";
color:#1F497D'><o:p>&nbsp;</o:p></span></p>

<div style='border:none;border-left:solid blue 1.5pt;padding:0in 0in 0in 4.0pt'>

<div>

<div style='border:none;border-top:solid #B5C4DF 1.0pt;padding:3.0pt 0in 0in 0in'>

<p class=MsoNormal><b><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif";
color:windowtext'>From:</span></b><span style='font-size:10.0pt;font-family:
"Tahoma","sans-serif";color:windowtext'> phenixbb-bounces@phenix-online.org
[mailto:phenixbb-bounces@phenix-online.org] <b>On Behalf Of </b>Pavel Afonine<br>
<b>Sent:</b> Friday, July 17, 2009 1:57 PM<br>
<b>To:</b> PHENIX user mailing list<br>
<b>Subject:</b> Re: [phenixbb] Unable to produce kicked maps<o:p></o:p></span></p>

</div>

</div>

<p class=MsoNormal><o:p>&nbsp;</o:p></p>

<p class=MsoNormal>Hi Carsten,<br>
<br>
replace:<br>
<br>
<span style='font-family:"Courier New"'>&nbsp; electron_density_maps {<br>
&nbsp;&nbsp;&nbsp; map {<br>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; mtz_label_amplitudes = &quot;FOFCWT&quot;<br>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; mtz_label_phases = &quot;PHFOFCWT&quot;<br>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; likelihood_weighted = True<br>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; obs_factor = 1<br>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; calc_factor = 1<br>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; kicked = True<br>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; fill_missing_f_obs_with_weighted_f_model = False<br>
&nbsp;&nbsp;&nbsp; }<br>
&nbsp;&nbsp;&nbsp; map {<br>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; mtz_label_amplitudes =
&quot;2FOFCWT_no_fill&quot;<br>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; mtz_label_phases = &quot;PH2FOFCWT_no_fill&quot;<br>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; likelihood_weighted = True<br>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; obs_factor = 2<br>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; calc_factor = 1<br>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; kicked = True<br>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; fill_missing_f_obs_with_weighted_f_model = False<br>
&nbsp;&nbsp;&nbsp; }<br>
&nbsp; }<br>
</span><br>
with<br>
<br>
<span style='font-family:"Courier New"'>&nbsp; electron_density_maps {<br>
&nbsp;&nbsp;&nbsp; map {<br>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; mtz_label_amplitudes = &quot;FOFCWT_kick&quot;<br>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; mtz_label_phases = &quot;PHFOFCWT_kick&quot;<br>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; likelihood_weighted = True<br>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; obs_factor = 1<br>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; calc_factor = 1<br>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; kicked = True<br>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; fill_missing_f_obs_with_weighted_f_model = False<br>
&nbsp;&nbsp;&nbsp; }<br>
&nbsp;&nbsp;&nbsp; map {<br>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; mtz_label_amplitudes =
&quot;2FOFCWT_no_fill_kick&quot;<br>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; mtz_label_phases =
&quot;PH2FOFCWT_no_fill_kick&quot;<br>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; likelihood_weighted = True<br>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; obs_factor = 2<br>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; calc_factor = 1<br>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; kicked = True<br>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; fill_missing_f_obs_with_weighted_f_model = False<br>
&nbsp;&nbsp;&nbsp; }<br>
&nbsp; }</span><br>
<br>
and most likely this will fix the problem.<br>
<br>
Pavel.<br>
<br>
<br>
On 7/17/09 10:53 AM, Schubert, Carsten [PRDUS] wrote: <o:p></o:p></p>

<p><span style='font-family:"Calibri","sans-serif"'>Hi ,</span><o:p></o:p></p>

<p><span style='font-family:"Calibri","sans-serif"'>I am trying to make some
kicked maps in 1.4.106.</span> <span style='font-family:"Calibri","sans-serif"'>At
the end of the run all I am getting is </span><o:p></o:p></p>

<p><span style='font-family:"Calibri","sans-serif"'>Sorry: Duplicate
mtz_label_amplitude FOFCWT</span> <o:p></o:p></p>

<p><span style='font-family:"Calibri","sans-serif"'>Any workaround, except not
to use kicked maps?</span><o:p></o:p></p>

<p><span style='font-family:"Calibri","sans-serif"'>Here the diff_params output
for easer debugging.</span><o:p></o:p></p>

<p><span style='font-family:"Calibri","sans-serif"'>Cheers</span><o:p></o:p></p>

<p>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; <span style='font-family:"Calibri","sans-serif"'>Carsten</span><o:p></o:p></p>

<p><span style='font-size:10.0pt;font-family:"Arial","sans-serif"'>&lt;&lt;diff.def&gt;&gt;
</span><o:p></o:p></p>

<pre><o:p>&nbsp;</o:p></pre><pre style='text-align:center'>

<hr size=4 width="90%" align=center>

</pre><pre><o:p>&nbsp;</o:p></pre><pre>_______________________________________________<o:p></o:p></pre><pre>phenixbb mailing list<o:p></o:p></pre><pre><a
href="mailto:phenixbb@phenix-online.org">phenixbb@phenix-online.org</a><o:p></o:p></pre><pre><a
href="http://www.phenix-online.org/mailman/listinfo/phenixbb">http://www.phenix-online.org/mailman/listinfo/phenixbb</a><o:p></o:p></pre><pre>&nbsp; <o:p></o:p></pre></div>

</div>

</body>

</html>