<html><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Hi Venkat,<div>Yes, you can use autobuild to create a map including model and experimental phase information:</div><div><br></div><div>phenix.autobuild data=sad_phase_info.mtz model=partial_mr_solution.pdb \</div><div>seq_file=seq.dat maps_only=true </div><div><br></div><div>This will refine the partial model, use it along with the sad phases in density modification, and produce coefficients for a new map for you:</div><div><br></div><div><div>--- Density-modified map coefficients FP PHIM FOM ---</div><div>hklout_denmod: AutoBuild_run_3_/cycle_best_2.mtz</div><div><br></div><div><br></div></div><div>All the best,</div><div>Tom T</div><div><br></div><div><br><div><div>On Sep 2, 2009, at 8:12 AM, r n wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 18px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0; "><div><div style="font-family: 'times new roman', 'new york', times, serif; font-size: 12pt; margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">Hi<span class="Apple-converted-space"> </span><br><br>I would like to know for low resolution data with poor phase information (SAD and partial MR), Is there possibility to<br>in Phenix to improve the phase and map using the partial model at low resolution (3.5 Ang), similar to TNT/BUSTER.<br><br>Thanks<br>venkat<br></div><div style="font-family: 'times new roman', 'new york', times, serif; font-size: 12pt; margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "><br><div style="font-family: arial, helvetica, sans-serif; font-size: 13px; margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "><font face="Tahoma" size="2"><hr size="1"><b><span style="font-weight: bold; "></span></b></font><br></div></div></div><br>_______________________________________________<br>phenixbb mailing list<br><a href="mailto:phenixbb@phenix-online.org">phenixbb@phenix-online.org</a><br><a href="http://www.phenix-online.org/mailman/listinfo/phenixbb">http://www.phenix-online.org/mailman/listinfo/phenixbb</a><br></div></span></blockquote></div><br><div apple-content-edited="true"> <span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div><div><div><div><div><br>Thomas C. Terwilliger<br>Mail Stop M888<br>Los Alamos National Laboratory<br>Los Alamos, NM 87545<br><br>Tel: 505-667-0072 email: <a href="mailto:terwilliger@LANL.gov">terwilliger@LANL.gov</a><br>Fax: 505-665-3024 SOLVE web site: <a href="http://solve.lanl.gov">http://solve.lanl.gov</a><br>PHENIX web site: http:<a href="http://www.phenix-online.org">www.phenix-online.org</a><br>ISFI Integrated Center for Structure and Function Innovation web site: <a href="http://techcenter.mbi.ucla.edu">http://techcenter.mbi.ucla.edu</a><br>TB Structural Genomics Consortium web site: <a href="http://www.doe-mbi.ucla.edu/TB">http://www.doe-mbi.ucla.edu/TB</a></div><div>CBSS Center for Bio-Security Science web site: <a href="http://www.lanl.gov/cbss">http://www.lanl.gov/cbss</a><br><br></div></div></div></div><br></div></div></span><br class="Apple-interchange-newline"> </div><br></div></body></html>