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<br><br>All the best,<br><br>Tanya<br><br><div class="gmail_quote">On Wed, Sep 9, 2009 at 3:22 PM, Maia Cherney <span dir="ltr"><<a href="mailto:chern@ualberta.ca">chern@ualberta.ca</a>></span> wrote:<br><blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
Hi,<br>
<br>
I am trying to find the answer to a question that was discussed long<br>
time ago at this forum, but there is no mechanism to find old discussions.<br>
<br>
You have to go through each month and figure out from the subjects where<br>
was a particular discussion.<br>
<br>
Could you, the phenix team, make it easier to find answers to those<br>
questions that had been answered previously.<br>
<br>
I remember, there was a question how to generate maps without<br>
refinement. I finished the refinement, but I need a map (in explor<br>
format) to show the 2fo-fc density in the publication.<br>
<br>
Maia<br>
<br>
<br>
<br>
<br>
<br>
Pavel Afonine wrote:<br>
> Hi Tirumala,<br>
><br>
> I agree, you are not the first who confused by this and an example right<br>
> in the message would help.<br>
><br>
> First, your MTZ file contains the following data: �(FP,SIGFP) and<br>
> (Fav,SIGFav) and it is your choice to select the one that you want to<br>
> use in refinement.<br>
><br>
> Second, once decided on the data - for example it is FP, then just add<br>
> to your command line this:<br>
><br>
> refinement.input.xray_data.labels=FP<br>
><br>
> or, which is the same<br>
><br>
> xray_data.labels="FP,SIGFP"<br>
><br>
> Pavel.<br>
><br>
><br>
><br>
> On 9/9/09 11:10 AM, Tirumala Kumar Chowdary wrote:<br>
><br>
>> Hi,<br>
>><br>
>> I am trying to run phenix.refine with a sharp output MTZ file (column<br>
>> labels �H K L NUMORB FB PHIB FOM HX HY FH PHIH FP SIGFP HLA HLB HLC HLD<br>
>> HL0 Fcent PHIcent FOMcent Fmap PHImap FHref PHIHref Fav SIGFav).<br>
>><br>
>> Phenix.refine stopped at<br>
>><br>
>> 'Multiple equally suitable arrays of observed xray data found.<br>
>><br>
>> Possible choices:<br>
>> � sharp_sad_se_eden.mtz:FP,SIGFP<br>
>> � sharp_sad_se_eden.mtz:Fav,SIGFav<br>
>><br>
>> Please use refinement.input.xray_data.labels'<br>
>><br>
>> Can someone tell me on how to use this<br>
>> 'refinement.input.xray_data.labels' and how to specify which column<br>
>> labels to use. There is nothing written in the documentation about it.<br>
>><br>
>> Thanks<br>
>> Tirumal<br>
>><br>
>><br>
>><br>
>><br>
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>><br>
>><br>
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><br>
><br>
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</blockquote></div><br>