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<TITLE>Re: [phenixbb] Command to call/read external file when running phenix.refine from</TITLE>
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<FONT FACE="Geneva, Verdana, Helvetica, Arial"><SPAN STYLE='font-size:11pt'>Hi Ashley, <BR>
Perhaps you could input a second parameter file with the additional restraints into the command line? Or make a single run file to invoke phenix.refine with your inputs and parameters? <BR>
Best regards,<BR>
Kendall Nettles<BR>
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On 10/23/09 9:31 AM, "Ashley Pike" <<a href="Ashley.Pike@sgc.ox.ac.uk">Ashley.Pike@sgc.ox.ac.uk</a>> wrote:<BR>
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</FONT></SPAN><BLOCKQUOTE><SPAN STYLE='font-size:11pt'><FONT FACE="Calibri, Verdana, Helvetica, Arial">Hi,<BR>
I am running phenix.refine(v.1.5.2) from the command line using a batch file containing all my customised options ie. phenix.refine my_parameters. From this batch file (my_parameters) I also want to include additional geometric and NCS restraints. Rather than have them clutter things up, I want to call/invoke them from an external file instead. I had been told that this is possible using the command 'include file <filename>' but it seems that this is not doing what I had hoped. When run in this way phenix.refine doesn't complain but is not using the restraints. Needless to say everything is fine when I actually include the information directly in the batch file. Any hints what I am doing wrong?<BR>
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Cheers,<BR>
<BR>
Ashley<BR>
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