You are right. It started in the 2nd macro cycle. I should have been a little more patient. Sorry about it.<div>Thanks,</div><div>Xuewu<br><br><div class="gmail_quote">On Tue, Nov 3, 2009 at 2:00 PM, <span dir="ltr"><<a href="mailto:phenixbb-request@phenix-online.org">phenixbb-request@phenix-online.org</a>></span> wrote:<br>
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Today's Topics:<br>
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1. Re: optimization of wxc and wxu (Xuewu Zhang)<br>
2. Re: optimization of wxc and wxu (Pavel Afonine)<br>
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----------------------------------------------------------------------<br>
<br>
Message: 1<br>
Date: Tue, 3 Nov 2009 08:28:58 -0600<br>
From: Xuewu Zhang <<a href="mailto:xuewu.zhang@gmail.com">xuewu.zhang@gmail.com</a>><br>
Subject: Re: [phenixbb] optimization of wxc and wxu<br>
To: <a href="mailto:phenixbb@phenix-online.org">phenixbb@phenix-online.org</a><br>
Message-ID:<br>
<<a href="mailto:926abad50911030628h31d09c53m59c2c84f1d024596@mail.gmail.com">926abad50911030628h31d09c53m59c2c84f1d024596@mail.gmail.com</a>><br>
Content-Type: text/plain; charset="iso-8859-1"<br>
<br>
Hi phenix developers/gurus,<br>
<br>
I am using the latest night build of phenix on OS X snow leopard. I found<br>
that phenix ignores these lines in my custom refinement file:<br>
<br>
refinement.target_weights.optimize_wxc="True"<br>
refinement.target_weights.optimize_wxu="True"<br>
<br>
Manually setting up the scale factors however works. I am not sure whether<br>
this is a bug or a platform related issue.<br>
<br>
Thanks,<br>
Xuewu Zhang<br>
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<br>
Message: 2<br>
Date: Tue, 03 Nov 2009 07:52:31 -0800<br>
From: Pavel Afonine <<a href="mailto:PAfonine@lbl.gov">PAfonine@lbl.gov</a>><br>
Subject: Re: [phenixbb] optimization of wxc and wxu<br>
To: PHENIX user mailing list <<a href="mailto:phenixbb@phenix-online.org">phenixbb@phenix-online.org</a>><br>
Message-ID: <<a href="mailto:4AF051BF.1010703@lbl.gov">4AF051BF.1010703@lbl.gov</a>><br>
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<br>
It's very unlikely that phenix.refine ignores it. These options are very<br>
old and are used routinely by many users. Therefore questions:<br>
<br>
- how you know that they are ignored?<br>
- could you please send me the log file?<br>
<br>
Note, that these weight optimizations start by default after certain<br>
number of macro-cycles, not immediately. There are several modes and you<br>
can use any you like. You can ask it to start from the first macro-cycle.<br>
<br>
Pavel.<br>
<br>
<br>
On 11/3/09 6:28 AM, Xuewu Zhang wrote:<br>
> Hi phenix developers/gurus,<br>
><br>
> I am using the latest night build of phenix on OS X snow leopard. I<br>
> found that phenix ignores these lines in my custom refinement file:<br>
><br>
> refinement.target_weights.optimize_wxc="True"<br>
> refinement.target_weights.optimize_wxu="True"<br>
><br>
> Manually setting up the scale factors however works. I am not sure<br>
> whether this is a bug or a platform related issue.<br>
><br>
> Thanks,<br>
> Xuewu Zhang<br>
><br>
> ------------------------------------------------------------------------<br>
><br>
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