<html><body bgcolor="#FFFFFF"><div>Try open my rather than auto open mtz in coot and then look behind the main window for the dialog box to select phases<br><br>Kendall Nettles</div><div><br>On Nov 24, 2009, at 5:26 AM, "Serah Wangari" <<a href="mailto:serah.wangari@gmail.com">serah.wangari@gmail.com</a>> wrote:<br><br></div><div></div><blockquote type="cite"><div>
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<p><font size="2">Dear Phenix users,<br>
<br>
I have run a number of Autobuild jobs using the Phenix GUI and in all<br>
cases, I'm not sure what output I should proceed with to the next<br>
step.<br>
<br>
- The first job was for rebuilding a loop section in the model<br>
(rebuild-in-place) - As far as I can remember, there was no mtz<br>
generated from this job, I had to generate map coefficients with the<br>
overall_best pdb and an old mtz using another refinement program. Did<br>
I miss something during the job input step, so that no mtz was<br>
generated, or how would I proceed in such a case?<br>
<br>
- The next job involved rebuilding the whole model (rebuild-in-place)<br>
- in this case, I took the overall_best pdb, but when I tried to open<br>
the overall_best_refine_map_coeffs.mtz in coot, I got this error that<br>
coot failed to find F/Phi columns in the mtz file. Then I checked in<br>
the TEMPO directory, and I managed to open a random mtz from one of<br>
the refinement cycles with coot, but I wasn't confident building into<br>
that, so again I had to generate map coefficients using overall_best<br>
pdb and an old mtz in another program.<br>
<br>
- The other job was rebuilding (rebuild-in-place) another model with<br>
composite maps generation - Here, in addition to the 12 mtz and pdb<br>
files from the 12 omit regions, I got resolve_composite_map.mtz I<br>
should assume as the only final output; and no final pdb. Again, this<br>
mtz file doesn't have the F/Phi columns as I got the same error as<br>
above in coot. I'm not sure how to proceed with this mtz......<br>
<br>
I would really appreciate if someone could point me to the right<br>
direction or at least direct me to some literature where the output<br>
from Phenix autobuild jobs is explained - as I haven't come across<br>
such info yet.<br>
<br>
Thank you in advance,<br>
<br>
Serah<br>
<br>
<br>
--<br>
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