Thanks, <div>I figured as much that the integration used python given the ph in phenix..hopefully python returns to the ccp4 provided coot . Till then I guess I will use the fink compiled coot or Bill Scotts binaries.</div>
<div><div>Hari <br><br></div><div><br><div class="gmail_quote">On Wed, Mar 3, 2010 at 7:13 PM, Nathaniel Echols <span dir="ltr"><<a href="mailto:NEchols@lbl.gov">NEchols@lbl.gov</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex;">
<div class="im">On Mar 3, 2010, at 2:36 PM, hari jayaram wrote:<br>
> Is it likely that the phenix-coot integration with the new GUI requires a python infused coot ?. Although I have set the coot path correctly nothing happens after coot launches .<br>
> I am using the ccp4 6.1.3 coot 0.6 (revision 2540) [with guile 1.8.3 embedded] and phenix 1.6.289 on OSX snow leopard 10.6.2.<br>
><br>
> I know the ccp4 coot does not come with python scripting support ...the pymol integration seems fine , but coot just sits there with an empty window after a phenix.validate run.<br>
<br>
</div>Sorry, without Python embedded there's nothing you can do. Don't bother with the Coot packages distributed by CCP4 - use the binaries on Bill Scott's web page, or install it with Fink. I think the GUI used to display a warning if the Coot build was incomplete, but I never got this to work properly. Unfortunately several other people have run into this same problem, so I'll see if I can restore the Python check.<br>
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-Nat<br>
<br>
--------------------<br>
Nathaniel Echols<br>
Lawrence Berkeley Lab<br>
510-486-5136<br>
<a href="mailto:NEchols@lbl.gov">NEchols@lbl.gov</a><br>
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<br>
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