Hi, <div> Are you sure the error is from CCP4, and not Phenix? I got this error from installing Phenix badly (IIRC).<div><br></div><div>Did you install Phenix by just moving the directory from one system to another, but which also involved changing the path? If so, it's easiest to re-run the installer:</div>
<div><span style="font-family:Times;font-size:medium"><pre>./install --prefix=/where/you/want/to/install/phenix</pre></span></div><div><a href="http://www.phenix-online.org/pipermail/phenixbb/2008-January/000689.html" target="_blank">http://www.phenix-online.org/pipermail/phenixbb/2008-January/000689.html</a></div>
<div><br></div><div>Otherwise, copying the entire directory tree, but keeping the paths the same on all systems worked for me when installing on multiple systems.</div><div><br></div><div>HTH</div><div><br></div><div>Mark</div>
<div>P.S. The configure.py to run would be "/cctbx_project/libtbx/configure.py" from PHENIX in that case, I guess.<br>
<br><div class="gmail_quote">On 9 March 2010 22:01, Patrick Loll <span dir="ltr"><<a href="mailto:pat.loll@drexel.edu" target="_blank">pat.loll@drexel.edu</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div style="word-wrap:break-word">Hi, <div><br></div><div>This is really a ccp4-provoked question, but it relates to phaser & cctbx (I think), so I'll try here as well:</div><div><br></div><div><div>After an install of ccp4 on a MacBook Pro running Snow Leopard and on a MacPro running Leopard, the command:</div>
<div> </div><div>source /sw*/bin/init.csh (where /sw* is either /sw64 on the machine running 10.6, or /sw on the machine running 10.5)</div><div><br></div><div>gives the error:</div><div><br></div><div><div> *******************************************</div>
<div> Fatal Error: Incomplete libtbx environment!</div><div> *******************************************</div><div> Please re-run the libtbx/configure.py command.</div><div><br></div><div><br></div><div><br></div><div>
If I go to ...ccp4.../src/phaser/phaser-2.1.4/libtbx/ and type </div><div><br></div><div>python configure.py</div><div><br></div><div>Then it tells me that the md5 module is deprecated, and that the cool kids use hashlib instead. Does this mean that I need to go to an earlier version of python? Will that mess up other things?</div>
<div><br></div><div>Curiously, one machines giving this problem has python 2.5.1, while the other has 2.6. However, I currently have python 2.5.1 running on another machine (albeit with a slightly earlier version of ccp4) and it doesn't give me this problem.</div>
<div><br></div><div>Ideas?</div><div><br></div><div>Thanks,</div><div><br></div><div>Pat</div><div><br></div></div><div> <span style="border-collapse:separate;color:rgb(0, 0, 0);font-family:Helvetica;font-size:medium;font-style:normal;font-variant:normal;font-weight:normal;letter-spacing:normal;line-height:normal;text-align:auto;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px"><div style="word-wrap:break-word">
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<font face="Helvetica" size="3">---------------------------------------------------------------------------------------</font></p><p style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px"><font face="Helvetica" size="3">Patrick J. Loll, Ph. D.<span> </span><span> </span></font></p>
<p style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px"><font face="Helvetica" size="3">Professor of Biochemistry & Molecular Biology</font></p><p style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px">
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<p style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;min-height:14px"><br></p><p style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px"><font face="Helvetica" size="3">(215) 762-7706</font></p>
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<br></blockquote></div><br><br clear="all"><br>-- <br>Skype: markabrooks<br>
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