<FONT face="Default Sans Serif,Verdana,Arial,Helvetica,sans-serif" size=2><div>Excellent!</div><div><br></div><div>Thanks Jeff and Pavel.</div><div><br></div><div>Jason</div><div><font color="#990099">-----phenixbb-bounces@phenix-online.org wrote: -----<br><br></font><blockquote style="padding-right:0px;padding-left:5px;margin-left:5px;border-left:#000000 2px solid;margin-right:0px">To: PHENIX user mailing list <phenixbb@phenix-online.org><br>From: Pavel Afonine <PAfonine@lbl.gov><br>Sent by: phenixbb-bounces@phenix-online.org<br>Date: 04/16/2010 06:21PM<br>Subject: Re: [phenixbb] Fix rotamers<br><br>
Hi Jason,<br><br>
sorry for the lack of documentation on this matter. <br><br>
I posted some information about real-space refinement on phenixbb
several times within last month. Here it is:<br><br>
<a class="moz-txt-link-freetext" href="http://cci.lbl.gov/%7Eafonine/rsr.pdf">http://cci.lbl.gov/~afonine/rsr.pdf</a><br><br>
but I agree this doesn't replace the proper documentation. <br><br>
Let me know if you have any questions.<br><br>
Pavel.<br><br><br>
On 4/16/10 12:52 PM, Jason C Porta wrote:
<blockquote cite="mid:OFCDF2E70C.AD76E54E-ON86257707.006D32D4-86257707.006D32DD@unmc.edu" type="cite"><font face="Default Sans Serif,Verdana,Arial,Helvetica,sans-serif" size="2">Hi
everyone, <br>
<br>
I'm currently looking for some info on the "fix rotamer" option in
phenix.refine. I searched the online docs and board archives, but came
up empty. <br>
<br>
Could someone please explain to me how the software carries out the
rotamer refinement? From the log file it looks like a map is calculated
for each rotamer followed by a real-space refinement? Am I thinking on
the right track? <br>
<br>
Thanks in advance!<br>
Jason<br>
</font></blockquote>
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