On Thu, Jul 8, 2010 at 9:10 AM, <span dir="ltr"><<a href="mailto:alexander.singer@utoronto.ca">alexander.singer@utoronto.ca</a>></span> wrote:<br><div class="gmail_quote"><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex;">
Hi -- I installed phenix-installer-1.6-289-intel-linux-2.6.tar on my Fedora Core 5 linux partition and most things run -- but not solve (which I was first trying from autosolve). As recommened by the documentation, when I type phenix.solve, here's what I have ---<br>
<br>
[root@ausinger oth32_c]# phenix.solve<br>
binary=/usr/local/phenix-1.6-289/build/intel-linux-2.6/solve_resolve/exe/solve<br>
SOLVEDIR=/usr/local/phenix-1.6-289/solve_resolve/ext_ref_files<br>
SYMOP=/usr/local/phenix-1.6-289/solve_resolve/ext_ref_files/symop.lib<br>
SYMINFO=/usr/local/phenix-1.6-289/solve_resolve/ext_ref_files/syminfo.lib<br>
CCP4_OPEN=UNKNOWN<br>
SOLVE_RESOLVE_MALLOC_MAX=1862380800<br>
<br>
/usr/local/phenix-1.6-289/build/intel-linux-2.6/solve_resolve/exe/solve: error w hile loading shared libraries: /usr/local/phenix-1.6-289/build/intel-linux-2.6/l ib/libimf.so: cannot restore segment prot after reloc: Permission denied<br>
</blockquote><div><br></div><div>This is a conflict with the SE ("Security Enhanced", or some such nonsense) Linux extensions. If you turn these off, SOLVE will run. I don't know the exact instructions, but if you Google for the phrase "cannot restore segment prot after reloc: Permission denied", you'll find plenty of links. I think this problem will go away in another couple of weeks.</div>
<div><br></div><div>PS. Please update to version 1.6.2.</div><div><br></div><div>-Nat</div></div>