<html><head><style type="text/css"><!-- DIV {margin:0px;} --></style></head><body><div style="font-family:"arial", "helvetica", sans-serif;font-size:10pt"><div>Tom, </div><div>Thanks a lot<br></div><div style="font-family:arial, helvetica, sans-serif;font-size:10pt"><br><div style="font-family:times new roman, new york, times, serif;font-size:12pt"><font size="2" face="Tahoma"><hr size="1"><b><span style="font-weight: bold;">From:</span></b> Tom Terwilliger <terwilliger@lanl.gov><br><b><span style="font-weight: bold;">To:</span></b> PHENIX user mailing list <phenixbb@phenix-online.org><br><b><span style="font-weight: bold;">Sent:</span></b> Wed, November 24, 2010 3:14:06 PM<br><b><span style="font-weight: bold;">Subject:</span></b> Re: [phenixbb] same origin<br></font><br>
Hi Ram,<div><br></div><div>You can use�</div><div><br></div><div>�� phenix.get_cc_mtz_pdb �map_coeffs1.mtz model_2.pdb</div><div><br></div><div>which will create�</div><div><br></div><div>�� �offset.pdb</div><div><br></div><div>which is a copy of model_2.pdb, adjusted for the origin of map_coeffs_1.mtz, and therefore superimposing on model_1.pdb with space-group symmetry plus allowed origin shifts.</div><div><br></div><div>This will not change the hand, however.</div><div><br></div><div>I hope that does what you need!</div><div>-Tom T</div><div><br></div><div><br></div><div><br></div><div><div><div>On Nov 24, 2010, at 1:53 PM, r n wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><span class="Apple-style-span"
style="border-collapse:separate;font-family:Helvetica;font-style:normal;font-variant:normal;font-weight:normal;letter-spacing:normal;line-height:normal;orphans:2;text-indent:0px;text-transform:none;white-space:normal;widows:2;word-spacing:0px;font-size:medium;"><div><div style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;"><table width="100%" cellspacing="0" cellpadding="0" align="center"><tbody><tr><td width="100%" height="100%" bgcolor="#ffffff" valign="top"><table width="100%" height="100%" cellspacing="0" cellpadding="0" align="center" style="table-layout:fixed;"><tbody><tr><td width="140" align="left" valign="bottom"><span><--static--liam_fetch_lb.gif></span></td><td valign="top" style="white-space:nowrap;"><table width="100%" cellspacing="0" cellpadding="0" style="white-space:normal;"><tbody><tr><td height="30"></td></tr><tr><td><font face="times new roman, new york, times, serif" size="2" color="#333333"
style="font-family:times, serif;font-size:10px;color:rgb(51, 51, 51);"><div style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;"><div style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;">Hi all</div><div style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;"><br></div><div style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;"><br></div><div style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;">I wanted to compare the two models from two data set. I want the MR replacement in same�</div><div style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;">origin to compare their them with respect to the map and model.</div><div style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;"><br></div><div style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;">I tried reforigin in ccp4 , it gave me some error
, that I am not aware or not clear.</div><div style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;"><br></div><div style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;">I did tried overlay the two model and rfree is going up. Most likely different hands,�</div><div style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;">so Is there any way to compare the two model and data and modify them in Phenix</div><div style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;">either reindex or shift the model origin to same in all cases.</div><div style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;"><br></div><div style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;">Thought phenix.xmanip could help, not seen any option to do it command line or in the GUI.</div><div
style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;"><br></div><div style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;">I did tried def file, but phenix.xmanip params.def , it complains me that unknown file or keyword?</div><div style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;"><br></div><div style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;">any help will be appreciated.</div><div style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;"><br></div><div style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;">Thanks</div><div style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;">ram</div><div style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;"><br></div><div style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;"><br></div><div
style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;"><br></div><div style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;"><br></div><div style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;"><br></div><div style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;"><br></div><div style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;"><br></div><div style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;"><br></div><div style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;"><br></div><div style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;"><br></div><div style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;"><br></div><div style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;"><br></div><div
style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;"><br></div><div style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;"><br></div><div style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;"><br></div><div style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;"><br></div><div style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;"><br></div><div style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;"><br></div><div style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;"><br></div><div style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;"><br></div><div style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;"><br></div><div style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;"><br></div></div></font></td></tr><tr><td
height="10"></td></tr></tbody></table></td><td width="30"></td></tr></tbody></table></td></tr><tr><td height="120" bgcolor="#ffffff"><table cellpadding="0" cellspacing="0" align="left"><tbody><tr><td width="310" height="120"><span><--static--liam_fetch_bl.gif></span></td><td align="right"></td></tr></tbody></table></td></tr></tbody></table></div><br>_______________________________________________<br>phenixbb mailing list<br><a rel="nofollow" ymailto="mailto:phenixbb@phenix-online.org" target="_blank" href="mailto:phenixbb@phenix-online.org">phenixbb@phenix-online.org</a><br><span><a target="_blank" href="http://phenix-online.org/mailman/listinfo/phenixbb">http://phenix-online.org/mailman/listinfo/phenixbb</a></span><br></div></span></blockquote></div><br><div>
<span class="Apple-style-span" style="border-collapse:separate;color:rgb(0, 0, 0);font-family:Helvetica;font-size:12px;font-style:normal;font-variant:normal;font-weight:normal;letter-spacing:normal;line-height:normal;orphans:2;text-align:auto;text-indent:0px;text-transform:none;white-space:normal;widows:2;word-spacing:0px;"><div><div><div><div><div><br>Thomas C. Terwilliger<br>Mail Stop M888<br>Los Alamos National Laboratory<br>Los Alamos, NM 87545<br><br>Tel:� 505-667-0072���������������� email: <a rel="nofollow" ymailto="mailto:terwilliger@LANL.gov" target="_blank" href="mailto:terwilliger@LANL.gov">terwilliger@LANL.gov</a><br><span>Fax: 505-665-3024���������������� SOLVE web site:�<a target="_blank" href="http://solve.lanl.gov">http://solve.lanl.gov</a></span><br>PHENIX web site: http:<a target="_blank" href="http://www.phenix-online.org">www.phenix-online.org</a><br><span>ISFI Integrated Center for Structure and
Function Innovation web�site:�<a target="_blank" href="http://techcenter.mbi.ucla.edu">http://techcenter.mbi.ucla.edu</a></span><br><span>TB Structural Genomics Consortium web site:�<a target="_blank" href="http://www.doe-mbi.ucla.edu/TB">http://www.doe-mbi.ucla.edu/TB</a></span></div><div><span>CBSS Center for Bio-Security Science web site: <a target="_blank" href="http://www.lanl.gov/cbss">http://www.lanl.gov/cbss</a></span><br><br></div></div></div></div><br></div></span><br class="Apple-interchange-newline">
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