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Rongjin,<br>
<br>
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outliers detection and rejection was inspired by this paper<br>
R.Read, Acta Cryst. (1999). D55, 1759-1764.<br>
<br>
and the paper by R.Agarwal's (197?/198?) mentions this too.<br>
<br>
You can always turn this off using "main.<span class="il">outliers_rejection</span>=<wbr>False"
if you believe it's necessary.<br>
<br>
It's probably the quality of your data that causes the amount of
outliers you quote.<br>
<br>
Pavel.<br>
<br>
PS> FYI: I got your email sent off-list and I always get the
emails sent to phenixbb, so there is no need to duplicate them. <br>
<br>
<br>
On 12/8/10 11:45 AM, <a class="moz-txt-link-abbreviated" href="mailto:guanrj@foxmail.com">guanrj@foxmail.com</a> wrote:
<blockquote cite="mid:201012081445211878599@foxmail.com" type="cite">
<pre wrap="">Hi All
I have a question regarding reflection outliers detection in phenix.refine:
in my input reflection file, there are 24432 reflections, but only 22769 of them
were used in refinement. I checked the log file and saw 1663 outliers.
(below if from the log)
basic_wilson_outliers = 14
extreme_wilson_outliers = 18
beamstop_shadow_outliers = 0
model_based_outliers = 1657
total = 1663
What is the "model_based_outliers"? What causes so many reflections rejected
and not used in the refinement?
Thanks
Rongjin
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