Dear Ralf,<br>Please see the result from hierarchy run.<br><br>phenix.pdb.hierarchy helices_strands .pdb<br>file helices_strands.pdb<br> total number of:<br> models: 1<br> chains: 1<br> alt. conf.: 0<br>
residues: 540<br> atoms: 540<br> anisou: 0<br> number of atom element+charge types: 1<br> histogram of atom element+charge frequency:<br> " " 540<br> residue name classes:<br> "common_amino_acid" 540<br>
number of chain ids: 1<br> histogram of chain id frequency:<br> " " 1<br> number of alt. conf. ids: 0<br> number of residue names: 1<br> histogram of residue name frequency:<br> "GLY" 540<br>
<br><br>Thanks.<br>Jobi<br><br><div class="gmail_quote">On Wed, Jan 12, 2011 at 2:04 PM, Ralf W. Grosse-Kunstleve <span dir="ltr"><<a href="mailto:rwgk@yahoo.com">rwgk@yahoo.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
<div><div style="font-family: Courier New,courier,monaco,monospace,sans-serif; font-size: 10pt;"><div>I'm guessing the helices_strands.pdb file got corrupted somehow.<br>Does<br><br>phenix.pdb.hierarchy helices_strands.pdb<br>
<br>give clues?<br><br>Ralf<br><br></div><blockquote style="border-left: 2px solid rgb(16, 16, 255); margin-left: 5px; padding-left: 5px;"><div style="font-family: Courier New,courier,monaco,monospace,sans-serif; font-size: 10pt;">
<br><div style="font-family: times new roman,new york,times,serif; font-size: 12pt;"><font face="Tahoma" size="2"><b><span style="font-weight: bold;">From:</span></b> Jobichen Chacko <<a href="mailto:jobichenc@gmail.com" target="_blank">jobichenc@gmail.com</a>><br>
<b><span style="font-weight: bold;">To:</span></b> PHENIX user mailing list <<a href="mailto:phenixbb@phenix-online.org" target="_blank">phenixbb@phenix-online.org</a>><br><b><span style="font-weight: bold;">Sent:</span></b> Tue, January 11, 2011 8:50:09 PM<br>
<b><span style="font-weight: bold;">Subject:</span></b> [phenixbb] Problem with Autobuild<br></font><div><div></div><div class="h5"><br>
Dear All,<br>I am trying to run Phenix autobuild using the helices-strands.pdb obtained using find helices and strands program.<br>But the program is not running with the following error message.<br>The file helices_strands.pdb does not seem to be a PDB file<br>
<br>Thanks.<br>Jobi<br><br><div class="gmail_quote"><blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;"><br>
<br></blockquote></div><br>
</div></div></div></div></blockquote>
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