<html><head></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Hi Kendall,<div><br></div><div>I'd recommend:</div><div><br></div><div>1. skip nbatch entirely, just use nproc to control the number of jobs.</div><div><br></div><div>2. If you are running rebuild_in_place=False, then use nproc=4. Any more won't make any difference.</div><div><br></div><div>3. If rebuild_in_place=True, use nproc=5.</div><div><br></div><div>4. If doing an omit map, use nproc = 5 * number of omit regions (so typically 100)</div><div><br></div><div>I hope that helps!</div><div>-Tom</div><div><br><div><div>On Jan 20, 2011, at 6:49 AM, Kendall Nettles wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><div>
<font face="Calibri, Verdana, Helvetica, Arial"><span style="font-size:11pt">Dear PHENIX developers, <br>
I�m preparing a bunch autobuild runs. If I submit 20 autobuild jobs to our 100 node cluster, what would you recommend for nproc and nbatch? How about for 10 jobs at once? <br>
Thanks!<br>
Kendall Nettles</span></font>
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<span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0; "><div><div><div><div><div><br>Thomas C. Terwilliger<br>Mail Stop M888<br>Los Alamos National Laboratory<br>Los Alamos, NM 87545<br><br>Tel: 505-667-0072 email: <a href="mailto:terwilliger@LANL.gov">terwilliger@LANL.gov</a><br>Fax: 505-665-3024 SOLVE web site: <a href="http://solve.lanl.gov">http://solve.lanl.gov</a><br>PHENIX web site: http:www.phenix-online.org<br>ISFI Integrated Center for Structure and Function Innovation web site: <a href="http://techcenter.mbi.ucla.edu">http://techcenter.mbi.ucla.edu</a><br>TB Structural Genomics Consortium web site: <a href="http://www.doe-mbi.ucla.edu/TB">http://www.doe-mbi.ucla.edu/TB</a></div><div>CBSS Center for Bio-Security Science web site: <a href="http://www.lanl.gov/cbss">http://www.lanl.gov/cbss</a><br><br></div></div></div></div><br></div></span><br class="Apple-interchange-newline">
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