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<TITLE>Problem with loop fitting</TITLE>
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<FONT FACE="Calibri, Verdana, Helvetica, Arial"><SPAN STYLE='font-size:11pt'>Dear PHENIX developers, <BR>
I am trying fit_loops for the first time and getting error message: <BR>
“No suitable gap found matching residues”<BR>
<BR>
I’m not sure what the problem is. <BR>
<BR>
Best regards,<BR>
Kendall Nettles<BR>
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knettles$ phenix.fit_loops pdb_in=Liganded_overall_best-coot-1.pdb mtz_in=cycle_best_refine_map_coeffs_1.mtz seq_file=seq.dat start=331 end=336 chain_id=A<BR>
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# fit_loops<BR>
#<BR>
# Fit loops in a PDB file with gaps<BR>
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# Type phenix.doc for help<BR>
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Input sequence file is seq.dat<BR>
Reading sequence from seq.dat<BR>
Fit_loops: Fit a missing loop in a model.<BR>
Map from: TEMP_cycle_best_refine_map_coeffs_1.mtz using labin FP=2FOFCWT PHIB=PH2FOFCWT <BR>
Model from: Liganded_overall_best-coot-1.pdb<BR>
LABIN LINE: FP=2FOFCWT PHIB=PH2FOFCWT <BR>
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No suitable gap found matching residues 331 - 336 chain: A<BR>
No final model obtained<BR>
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