<html><head></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Hi again Ben,<div><br><div>I forgot to mention that there are also several worked-out examples for phenix.mr_rosetta:</div><div><br></div><div>1. If you go to: $PHENIX/phenix_examples/HNP3-mr-rosetta there is a demo example for a small structure.</div><div><br></div><div>2. If you go to: <a href="http://www.phenix-online.org/phenix_data/terwilliger/rosetta_2011/">http://www.phenix-online.org/phenix_data/terwilliger/rosetta_2011/</a> you will find several real examples with scripts in the blind_tests/ directory.</div><div><br></div><div>All the best,</div><div>Tom T</div><div><br></div><div><br></div><div><div><div>On Jan 31, 2011, at 1:15 PM, Ben Eisenbraun wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><div>Hi,<br><br>I'm testing Rosetta 3.2+PHENIX 1.7-650, and in the phenix.mr_rosetta<br>output, I see:<br><br>Checking rosetta paths:<br> rosetta binary: /programs/l/rosetta/3.2/rosetta_source/bin/mr_protocols.default <br> database_dir: /programs/l/rosetta/3.2/rosetta_database <br> script_dir: /programs/l/rosetta/3.2/rosetta_source/src/apps/public/electron_density<br>pilot_script_dir: /programs/l/rosetta/3.2/rosetta_source/src/apps/pilot/frank/<br><br>In the script directory, the C++ files were not built along with the<br>regular Rosetta build. Do those need to be compiled for the target<br>platform?<br><br>Also, the pilot_script_dir is empty. Is there supposed to be something in<br>there?<br><br>Thanks.<br><br>-ben<br><br>--<br>| Ben Eisenbraun<br>| SBGrid Consortium | <a href="http://sbgrid.org">http://sbgrid.org</a> |<br>| Harvard Medical School | <a href="http://hms.harvard.edu">http://hms.harvard.edu</a> |<br>_______________________________________________<br>phenixbb mailing list<br><a href="mailto:phenixbb@phenix-online.org">phenixbb@phenix-online.org</a><br>http://phenix-online.org/mailman/listinfo/phenixbb<br></div></blockquote></div><br><div>
<span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0; "><div><div><div><div><div><br>Thomas C. Terwilliger<br>Mail Stop M888<br>Los Alamos National Laboratory<br>Los Alamos, NM 87545<br><br>Tel: 505-667-0072 email: <a href="mailto:terwilliger@LANL.gov">terwilliger@LANL.gov</a><br>Fax: 505-665-3024 SOLVE web site: <a href="http://solve.lanl.gov">http://solve.lanl.gov</a><br>PHENIX web site: http:www.phenix-online.org<br>ISFI Integrated Center for Structure and Function Innovation web site: <a href="http://techcenter.mbi.ucla.edu">http://techcenter.mbi.ucla.edu</a><br>TB Structural Genomics Consortium web site: <a href="http://www.doe-mbi.ucla.edu/TB">http://www.doe-mbi.ucla.edu/TB</a></div><div>CBSS Center for Bio-Security Science web site: <a href="http://www.lanl.gov/cbss">http://www.lanl.gov/cbss</a><br><br></div></div></div></div><br></div></span><br class="Apple-interchange-newline">
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