<html><head></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Hi,<div><br></div><div>Could you send the log file (not necessarily to the list)? The interesting one would be</div><div><br></div><div>AutoMR_run_*_/AutoMR_run_*_1.log</div><div><br></div><div>This might give a hint about where you're running out of memory. Phaser has gradually been getting better in its memory usage, so I'm surprised that something that worked before isn't working now.</div><div><br></div><div>Thanks!</div><div><br></div><div>Randy Read</div><div><br><div><div>On 18 Feb 2011, at 01:00, Erik R. Kish-Trier wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Hi,<div><br></div><div>I am getting the following error from AutoMR, which I am fairly certain is due to the deficiencies of my machine:</div><div><br></div><div><div>Python(2624) malloc: *** mmap(size=1665024000) failed (error code=12)</div><div>*** error: can't allocate region</div><div>*** set a breakpoint in malloc_error_break to debug</div><div><br></div><div>While using the prior release of phenix, I was able to get a similar job to complete, which makes me curious.</div><div><br></div><div>I am running phenix 1.7-650 (GUI) on an Intel Mac with 4GB of RAM and OS 10.6.6.</div><div><br></div><div>Any suggestions?</div><div><br></div><div>Thanks!</div><div><br></div><div>Erik</div></div></div></blockquote></div><br><div>
<span class="Apple-style-span" style="border-collapse: separate; font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "><span class="Apple-style-span" style="border-collapse: separate; font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "><div>------</div><div>Randy J. Read</div><div>Department of Haematology, University of Cambridge</div><div>Cambridge Institute for Medical Research Tel: + 44 1223 336500</div><div>Wellcome Trust/MRC Building Fax: + 44 1223 336827</div><div>Hills Road E-mail: <a href="mailto:rjr27@cam.ac.uk">rjr27@cam.ac.uk</a></div><div>Cambridge CB2 0XY, U.K. www-structmed.cimr.cam.ac.uk</div></span></span>
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