Hi, <br><br>When I run MR in Phenix, I found that there is a numbering error in the solution PDB file<br><br>The error is that Phenix numbers residues from 0 again when the residue numbers are over 999, though they belong to the same chain.<br>
<br>For example <br><br>"ATOM 11504 N HIS C 999 -37.389 50.436 57.144 1.00 56.62 N<br>ATOM 11505 CA HIS C 999 -36.908 51.569 57.924 1.00 60.55 C<br>ATOM 11506 C HIS C 999 -37.438 51.479 59.337 1.00 61.73 C<br>
ATOM 11507 O HIS C 999 -38.648 51.484 59.549 1.00 60.99 O<br>ATOM 11508 CB HIS C 999 -37.382 52.895 57.326 1.00 63.09 C<br>ATOM 11509 CG HIS C 999 -36.353 53.577 56.478 1.00 66.67 C<br>
ATOM 11510 ND1 HIS C 999 -35.280 52.912 55.925 1.00 68.12 N<br>ATOM 11511 CD2 HIS C 999 -36.247 54.865 56.070 1.00 68.95 C<br>ATOM 11512 CE1 HIS C 999 -34.559 53.762 55.214 1.00 69.21 C<br>
ATOM 11513 NE2 HIS C 999 -35.122 54.953 55.285 1.00 69.80 N<br>ATOM 11514 N MET C 0 -36.544 51.378 60.309 1.00 64.17 N<br>ATOM 11515 CA MET C 0 -36.992 51.355 61.688 1.00 66.45 C<br>
ATOM 11516 C MET C 0 -37.290 52.797 62.083 1.00 68.10 C<br>ATOM 11517 O MET C 0 -37.018 53.716 61.302 1.00 68.58 O<br>ATOM 11518 CB MET C 0 -35.903 50.763 62.605 1.00 67.35 C<br>
ATOM 11519 CG MET C 0 -36.051 49.272 62.997 1.00 67.14 C<br>ATOM 11520 SD MET C 0 -36.534 48.947 64.735 1.00 65.84 S<br>ATOM 11521 CE MET C 0 -35.169 49.744 65.675 1.00 66.20 C<br>
ATOM 11522 N VAL C 1 -37.840 53.015 63.272 1.00 69.46 N<br>ATOM 11523 CA VAL C 1 -38.160 54.373 63.711 1.00 69.99 C<br>ATOM 11524 C VAL C 1 -36.911 55.251 63.875 1.00 70.28 C<br>
ATOM 11525 O VAL C 1 -37.029 56.452 64.122 1.00 70.20 O<br>ATOM 11526 CB VAL C 1 -38.908 54.379 65.057 1.00 70.57 C<br>ATOM 11527 CG1 VAL C 1 -40.322 53.847 64.873 1.00 71.16 C<br>
ATOM 11528 CG2 VAL C 1 -38.148 53.537 66.061 1.00 70.54 C" <br><br>Does anyone has idea about it?<br><br>Thanks <br><br>Yu Zhang<br>