I ran the tests as requested and got an "ALL COMMAND_LINE TESTS OK" so things appear to be working fine. I am submitting my job to a cluster using a script that qsubs nodes=1:ppn=4,walltime=160:00:00. Then executes another script that sources phenix, sets an export phenix_rosetta path an runs "phenix.mr_rosetta mr_rosetta_params.eff ". <br>
<br><br>JJ<br><div style="padding: 0px; overflow: hidden; visibility: hidden; left: -5000px; position: absolute; z-index: 9999; margin-left: 0px; margin-top: 0px; word-wrap: break-word; color: black; font-size: 10px; text-align: left; line-height: 130%;" id="avg_ls_inline_popup">
</div><br><div class="gmail_quote">On Tue, May 10, 2011 at 9:56 PM, Thomas C. Terwilliger <span dir="ltr"><<a href="mailto:terwilliger@lanl.gov">terwilliger@lanl.gov</a>></span> wrote:<br><blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
Hi Jermaine,<br>
I am sorry for the trouble! I am wondering if rosetta is working quite<br>
right? Can you possibly run the regression tests on mr_rosetta:<br>
<br>
phenix_regression.wizards.test_command_line_rosetta_quick_tests<br>
<br>
and see if that helps diagnose the problem?<br>
All the best,<br>
Tom T<br>
<br>
>> I have been trying a standard run of mr_rosetta and I have stopped at the<br>
>> same point (output below). 32 folders were created in the<br>
>> GROUP_OF_RESCORE_MR_ROSETTA_1 folder and the mr_rosetta.log files all say<br>
>> that saved overall results to a .../results.pkl and the Run log file<br>
>> states<br>
>> that each job finished. But no further files were written in the Work<br>
>> folder<br>
>> under each RUN folder and I am assuming there should be a folder with my<br>
>> final 20 Rosetta models somewhere. Does this mean there was a failure in a<br>
>> subscript?<br>
>> ==============================================================================<br>
>><br>
>> Starting sub-processes Group of rescore MR rosetta:Rescoring set of<br>
>> rosetta<br>
>> models...<br>
>> ==============================================================================<br>
>><br>
>> Splitting work into 32 jobs and running with 4 processors using sh<br>
>> background=True in ....MR_ROSETTA_1/GROUP_OF_RESCORE_MR_ROSETTA_1<br>
>><br>
>> Starting job 1...Log will be:<br>
>> ..../MR_ROSETTA_1/GROUP_OF_RESCORE_MR_ROSETTA_1/RUN_FILE_1.log<br>
>> Starting job 2...Log will be:<br>
>> ..../MR_ROSETTA_1/GROUP_OF_RESCORE_MR_ROSETTA_1/RUN_FILE_2.log<br>
>><br>
>> thanks,<br>
>> JJ<br>
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>><br>
<br>
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</blockquote></div><br>