Hi Nat,<div><br></div><div>Thank you so much! That's cool. I just wrote a None to that solution and it works!! Now I have some new problems:</div><div><br></div><div><meta http-equiv="content-type" content="text/html; charset=utf-8"><div style="border-collapse: collapse; font-family: arial, sans-serif; font-size: 13px; ">
At beginning, I only have phenix installed. I do not have CCP4 installed. Then I run "phenix.phaser params.eff" to call phenix run phaser from script params.eff. It works well. </div><div style="border-collapse: collapse; font-family: arial, sans-serif; font-size: 13px; ">
<br></div><div style="border-collapse: collapse; font-family: arial, sans-serif; font-size: 13px; ">Then, I installed CCP4 with its own phaser inside. Then I run again "phenix.phaser params.eff". The computer start to import files (should be some libraries and supporting files, not input data) from CCP4 installation directory. It seems so strange for me. </div>
<div style="border-collapse: collapse; font-family: arial, sans-serif; font-size: 13px; "><br></div><div style="border-collapse: collapse; font-family: arial, sans-serif; font-size: 13px; "><meta http-equiv="content-type" content="text/html; charset=utf-8">And because some of the .so files in CCP4 directory are for 32bit, phenix.phaser gave me error message: wrong ELF class: ELFCLASS32 and refused to keep running.</div>
<div style="border-collapse: collapse; font-family: arial, sans-serif; font-size: 13px; "><br></div><div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">Is there anyway to set some kind of PATH </span></font><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">variables to let phenix.phaser params.eff run like without CCP4 installed. (which I did at beginning). </span></font></div>
<div><span class="Apple-style-span" style="border-collapse: collapse; font-family: arial, sans-serif; "><br></span></div><div><span class="Apple-style-span" style="border-collapse: collapse; font-family: arial, sans-serif; ">Sorry for so many questions. Don't worry to reply if you do not have time. </span></div>
<div><span class="Apple-style-span" style="border-collapse: collapse; font-family: arial, sans-serif; ">I fully understand and thanks a lot for your reply.</span></div><div><span class="Apple-style-span" style="border-collapse: collapse; font-family: arial, sans-serif; "><br>
</span></div><div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">regards,</span></font></div><div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">GP</span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;"><br></span></font></div><div></div><div><br></div><br><div class="gmail_quote">On Wed, Jul 20, 2011 at 8:27 PM, Nathaniel Echols <span dir="ltr"><<a href="mailto:nechols@lbl.gov">nechols@lbl.gov</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex;"><div class="im">On Wed, Jul 20, 2011 at 3:46 AM, G P <<a href="mailto:gysubscribe@gmail.com">gysubscribe@gmail.com</a>> wrote:<br>
> Now I can make it. I just type labin="FP,SIGFP,DANO,SIGDANO". Then there is<br>
> no error to find the labels. I think because I should give all columns<br>
> together.<br>
<br>
</div>Right, sorry, that's another thing that CCTBX does automatically.<br>
This command will show you what array labels Phenix recognizes:<br>
<br>
iotbx.reflection_file_reader data.mtz<br>
<div class="im"><br>
> But there is another problem. When I run the script, it shows me:<br>
> ...<br>
> File "/usr/local/phenix-1.7.1-743/phaser/phaser/phenix_interface/driver.py",<br>
> line 694, in __init__<br>
> assert os.path.isfile(params.phaser.solution)<br>
> AssertionError<br>
> File "/usr/local/phenix-1.7.1-743/phaser/phaser/phenix_interface/driver.py",<br>
> line 694, in __init__<br>
> assert os.path.isfile(params.phaser.solution)<br>
> AssertionError<br>
<br>
</div>Look for a parameter called "solution" - this needs to be left as<br>
None. (I don't think there's any way to use this from the command<br>
line right now - it's very specific to the GUI.)<br>
<div><div></div><div class="h5"><br>
-Nat<br>
_______________________________________________<br>
phenixbb mailing list<br>
<a href="mailto:phenixbb@phenix-online.org">phenixbb@phenix-online.org</a><br>
<a href="http://phenix-online.org/mailman/listinfo/phenixbb" target="_blank">http://phenix-online.org/mailman/listinfo/phenixbb</a><br>
</div></div></blockquote></div><br></div>