<div>Hi Tom</div>
<div>i tried the commnad line and it works well. we also have increased the memory to 3GB (earlier it was 2GB)</div>
<div>but still the system hangs with no response overnight.</div>
<div>the specifications of my system is as:</div>
<div>Ubuntu 9.04<br>GCC 4.2<br>RAM 3GB<br>Rosetta 3.2<br>Phenix 1.7.1<br>the command line test using "phenix_regression.wizards.test_command_line_rosetta_quick_tests<br>test_rosetta_rebuild" works well .</div>
<div><br>regards</div>
<div>intekhab alam<br></div>
<div class="gmail_quote">On Tue, Jul 19, 2011 at 11:31 PM, Thomas C. Terwilliger <span dir="ltr"><<a href="mailto:terwilliger@lanl.gov">terwilliger@lanl.gov</a>></span> wrote:<br>
<blockquote style="BORDER-LEFT: #ccc 1px solid; MARGIN: 0px 0px 0px 0.8ex; PADDING-LEFT: 1ex" class="gmail_quote">Hi Intekhab,<br><br>I'm not sure about the part about the machine shutting down...but here is<br>a little test you can run to make sure that rosetta and phenix are working<br>
properly together in rebuilding a model:<br><br>�phenix_regression.wizards.test_command_line_rosetta_quick_tests<br>test_rosetta_rebuild<br><br>or a more complete set of tests:<br><br>�phenix_regression.wizards.test_command_line_rosetta_quick_tests<br>
<br>All the best,<br>Tom T<br>
<div>
<div></div>
<div class="h5"><br><br><br>>> On 07/19/2011 04:49 PM, intekhab alam wrote:<br>>>><br>>>> Hi<br>>>> i tried to run rosetta on a unix machine (ubuntu 9.04) for my data. Upto<br>>>> MR step everything goes fine , but during the rebuilding step after 20<br>
>>> cycles the computer shuts down.<br>>><br>>> Interesting behavior for a Linux machine.<br>>><br>>> Once the machine has rebooted, reading the output<br>>> of the dmesg command and looking at events prior to the last boot<br>
>> may give you some information on why the computer hung.<br>>><br>>> My guess is that you went out of memory while using mr_rosetta.<br>>><br>>>> i have attached the log file for the autobuilding run of rosetta. i am<br>
>>> using phenix 1.7.1-743 version.<br>>>> i will be grateful if some one helps me out<br>>>> --<br>>>> INTEKHAB ALAM<br>>>> LABORATORY OF STRUCTURAL BIOINFORMATICS<br>>>> KOREA UNIVERSITY, SEOUL<br>
>>><br>>>><br>>>><br>>>> _______________________________________________<br>>>> phenixbb mailing list<br>>>> <a href="mailto:phenixbb@phenix-online.org">phenixbb@phenix-online.org</a><br>
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</div></div></blockquote></div><br><br clear="all"><br>-- <br>INTEKHAB ALAM<br>LABORATORY OF STRUCTURAL BIOINFORMATICS<br>KOREA UNIVERSITY, SEOUL<br>