<meta http-equiv="content-type" content="text/html; charset=utf-8">Hi Nat,<div><br></div><div>Thanks for you help. I solved that problem with Ralf's help now. Just reset the $PATH make phenix.phaser appearing before CCP4's. </div>
<div><br></div><div>GP</div><br><div class="gmail_quote">On Wed, Jul 20, 2011 at 8:39 PM, Nathaniel Echols <span dir="ltr"><<a href="mailto:nechols@lbl.gov">nechols@lbl.gov</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex;">
I think this is a known problem, but I'm not sure how to fix it - I am<br>
downloading the latest CCP4 now to try for myself. Ralf probably<br>
knows more. Did you source the setup file in the CCP4 installation?<br>
<br>
-Nat<br>
<div><div></div><div class="h5"><br>
On Wed, Jul 20, 2011 at 11:35 AM, G P <<a href="mailto:gysubscribe@gmail.com">gysubscribe@gmail.com</a>> wrote:<br>
> Hi Nat,<br>
> Thank you so much! That's cool. I just wrote a None to that solution and it<br>
> works!! Now I have some new problems:<br>
> At beginning, I only have phenix installed. I do not have CCP4 installed.<br>
> Then I run "phenix.phaser params.eff" to call phenix run phaser from script<br>
> params.eff. It works well.<br>
> Then, I installed CCP4 with its own phaser inside. Then I run again<br>
> "phenix.phaser params.eff". The computer start to import files (should be<br>
> some libraries and supporting files, not input data) from CCP4 installation<br>
> directory. It seems so strange for me.<br>
> And because some of the .so files in CCP4 directory are for 32bit,<br>
> phenix.phaser gave me error message: wrong ELF class: ELFCLASS32 and refused<br>
> to keep running.<br>
> Is there anyway to set some kind of PATH variables to let phenix.phaser<br>
> params.eff run like without CCP4 installed. (which I did at beginning).<br>
> Sorry for so many questions. Don't worry to reply if you do not have time.<br>
> I fully understand and thanks a lot for your reply.<br>
> regards,<br>
> GP<br>
><br>
><br>
> On Wed, Jul 20, 2011 at 8:27 PM, Nathaniel Echols <<a href="mailto:nechols@lbl.gov">nechols@lbl.gov</a>> wrote:<br>
>><br>
>> On Wed, Jul 20, 2011 at 3:46 AM, G P <<a href="mailto:gysubscribe@gmail.com">gysubscribe@gmail.com</a>> wrote:<br>
>> > Now I can make it. I just type labin="FP,SIGFP,DANO,SIGDANO". Then there<br>
>> > is<br>
>> > no error to find the labels. I think because I should give all columns<br>
>> > together.<br>
>><br>
>> Right, sorry, that's another thing that CCTBX does automatically.<br>
>> This command will show you what array labels Phenix recognizes:<br>
>><br>
>> iotbx.reflection_file_reader data.mtz<br>
>><br>
>> > But there is another problem. When I run the script, it shows me:<br>
>> > ...<br>
>> > File<br>
>> > "/usr/local/phenix-1.7.1-743/phaser/phaser/phenix_interface/driver.py",<br>
>> > line 694, in __init__<br>
>> > assert os.path.isfile(params.phaser.solution)<br>
>> > AssertionError<br>
>> > File<br>
>> > "/usr/local/phenix-1.7.1-743/phaser/phaser/phenix_interface/driver.py",<br>
>> > line 694, in __init__<br>
>> > assert os.path.isfile(params.phaser.solution)<br>
>> > AssertionError<br>
>><br>
>> Look for a parameter called "solution" - this needs to be left as<br>
>> None. (I don't think there's any way to use this from the command<br>
>> line right now - it's very specific to the GUI.)<br>
>><br>
>> -Nat<br>
>> _______________________________________________<br>
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><br>
><br>
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</div></div></blockquote></div><br>