<div>Hi, Tom</div>
<div>sorry for the delayed response.</div>
<div>I was abale to fix by running one model.</div>
<div>rosetta is working fine now.</div>
<div> </div>
<div>thanks again</div>
<div> </div>
<div>Intekhab Alam<br><br></div>
<div class="gmail_quote">On Thu, Jul 21, 2011 at 11:49 PM, Thomas C. Terwilliger <span dir="ltr"><<a href="mailto:terwilliger@lanl.gov">terwilliger@lanl.gov</a>></span> wrote:<br>
<blockquote style="BORDER-LEFT: #ccc 1px solid; MARGIN: 0px 0px 0px 0.8ex; PADDING-LEFT: 1ex" class="gmail_quote">Hi Intekhab,<br><br>I'm glad the test works at least. How about trying this:<br><br>Run just the job that hangs, but instead of running 100 models...just run<br>
one single model. Does that work?<br><br>All the best,<br>Tom<br>
<div>
<div></div>
<div class="h5"><br><br>>> Hi Tom<br>>> i tried the commnad line and it works well. we also have increased the<br>>> memory to 3GB (earlier it was 2GB)<br>>> but still the system hangs with no response overnight.<br>
>> the specifications of my system is as:<br>>> Ubuntu 9.04<br>>> GCC 4.2<br>>> RAM 3GB<br>>> Rosetta 3.2<br>>> Phenix 1.7.1<br>>> the command line test using<br>>> "phenix_regression.wizards.test_command_line_rosetta_quick_tests<br>
>> test_rosetta_rebuild" works well .<br>>><br>>> regards<br>>> intekhab alam<br>>> On Tue, Jul 19, 2011 at 11:31 PM, Thomas C. Terwilliger <<br>>> <a href="mailto:terwilliger@lanl.gov">terwilliger@lanl.gov</a>> wrote:<br>
>><br>>>> Hi Intekhab,<br>>>><br>>>> I'm not sure about the part about the machine shutting down...but here<br>>>> is<br>>>> a little test you can run to make sure that rosetta and phenix are<br>
>>> working<br>>>> properly together in rebuilding a model:<br>>>><br>>>> phenix_regression.wizards.test_command_line_rosetta_quick_tests<br>>>> test_rosetta_rebuild<br>>>><br>
>>> or a more complete set of tests:<br>>>><br>>>> phenix_regression.wizards.test_command_line_rosetta_quick_tests<br>>>><br>>>> All the best,<br>>>> Tom T<br>>>><br>
>>><br>>>><br>>>> >> On 07/19/2011 04:49 PM, intekhab alam wrote:<br>>>> >>><br>>>> >>> Hi<br>>>> >>> i tried to run rosetta on a unix machine (ubuntu 9.04) for my data.<br>
>>> Upto<br>>>> >>> MR step everything goes fine , but during the rebuilding step after<br>>>> 20<br>>>> >>> cycles the computer shuts down.<br>>>> >><br>
>>> >> Interesting behavior for a Linux machine.<br>>>> >><br>>>> >> Once the machine has rebooted, reading the output<br>>>> >> of the dmesg command and looking at events prior to the last boot<br>
>>> >> may give you some information on why the computer hung.<br>>>> >><br>>>> >> My guess is that you went out of memory while using mr_rosetta.<br>>>> >><br>>>> >>> i have attached the log file for the autobuilding run of rosetta. i<br>
>>> am<br>>>> >>> using phenix 1.7.1-743 version.<br>>>> >>> i will be grateful if some one helps me out<br>>>> >>> --<br>>>> >>> INTEKHAB ALAM<br>
>>> >>> LABORATORY OF STRUCTURAL BIOINFORMATICS<br>>>> >>> KOREA UNIVERSITY, SEOUL<br>>>> >>><br>>>> >>><br>>>> >>><br>>>> >>> _______________________________________________<br>
>>> >>> phenixbb mailing list<br>>>> >>> <a href="mailto:phenixbb@phenix-online.org">phenixbb@phenix-online.org</a><br>>>> >>> <a href="http://phenix-online.org/mailman/listinfo/phenixbb" target="_blank">http://phenix-online.org/mailman/listinfo/phenixbb</a><br>
>>> >><br>>>> >> _______________________________________________<br>>>> >> phenixbb mailing list<br>>>> >> <a href="mailto:phenixbb@phenix-online.org">phenixbb@phenix-online.org</a><br>
>>> >> <a href="http://phenix-online.org/mailman/listinfo/phenixbb" target="_blank">http://phenix-online.org/mailman/listinfo/phenixbb</a><br>>>> >><br>>>><br>>>> _______________________________________________<br>
>>> phenixbb mailing list<br>>>> <a href="mailto:phenixbb@phenix-online.org">phenixbb@phenix-online.org</a><br>>>> <a href="http://phenix-online.org/mailman/listinfo/phenixbb" target="_blank">http://phenix-online.org/mailman/listinfo/phenixbb</a><br>
>>><br>>><br>>><br>>><br>>> --<br>>> INTEKHAB ALAM<br>>> LABORATORY OF STRUCTURAL BIOINFORMATICS<br>>> KOREA UNIVERSITY, SEOUL<br>>><br><br></div></div></blockquote>
</div><br><br clear="all"><br>-- <br>INTEKHAB ALAM<br>LABORATORY OF STRUCTURAL BIOINFORMATICS<br>KOREA UNIVERSITY, SEOUL<br>