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Somebody helped me out with the format. Thanks.<br>
My alignment file looks like:<br>
<tt>## SP 3n91<br>
<br>
<br>
0 --DDDEVTMNSK....<br>
0 GSDNEFPDFDYQ....<br>
<br>
<br>
</tt><br>
But phenix says<br>
<br>
******************* ERROR ENDING ***************<br>
<br>
Sorry, the alignment file ['xx.ali'] <br>
does not seem to have the correct format?<br>
It can either start with '##' or with '> title of target seq
here'<br>
<br>
******************* ERROR ENDING ***************<br>
<br>
I do have the file starting with '##'!<br>
<br>
<div class="moz-signature">
<font color="#000099" face="Times">
Thanks, <br>
Abhinav </font>
<p>
<font size="-1" color="#0099aa" face="Verdana">
JCSG@SSRL, SLAC <br>
Phone: (650) 926-2992 <br>
Fax: (650) 926-3292 <br>
</font></p>
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<br>
On 10/11/2011 12:23 PM, Abhinav Kumar wrote:
<blockquote cite="mid:4E9497C1.4020703@slac.stanford.edu"
type="cite">
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Hi,<br>
<br>
I am looking for file format for alignment file (*.ali) used in
mr_rosetta.<br>
The description on the Phenix web site is not clear. <br>
Can someone please describe the file format with an example?<br>
<div class="moz-signature">-- <br>
<br>
<font color="#000099" face="Times"> Thanks, <br>
Abhinav </font>
<p> <font size="-1" color="#0099aa" face="Verdana"> JCSG@SSRL,
SLAC <br>
Phone: (650) 926-2992 <br>
Fax: (650) 926-3292 <br>
</font></p>
</div>
</blockquote>
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