<html><head></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div><br></div><div><br></div><div>Dear all,</div><div><br></div><div>I have a question regarding the "nproc" parameter in phenix.refine;</div><div><br></div><div>We have the software installed on our university HPC cluster, which has nodes built up of 8 processors each. Submission works via a queuing system ("qsub"). I understand that compiling with OpenMP renders the nproc parameter disfunctional. Does this then imply that I will be limited to 1 node (8 processors) if compiled without OpenMP, since there is no "message passing" to other nodes? Or is there a way to make use of more of the available nodes, for example by compiling with OpenMP and then specifying many nodes with 1 processor?</div><div><br></div><div><br></div>Best regards,<br><br><div>
<span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: -webkit-auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; font-size: medium; "><div>Jonathan Elegheert</div><div>PhD Student</div><div><br></div><div>Unit for Structural Biology & Biophysics</div><div>Ghent University</div><div><br></div><div><a href="mailto:jonathan.elegheert@ugent.be">jonathan.elegheert@ugent.be</a></div><div><br></div></span><br class="Apple-interchange-newline">
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