<html><body><div style="color:#000; background-color:#fff; font-family:times new roman, new york, times, serif;font-size:12pt"><div style="RIGHT: auto">Dear All,</div>
<div style="RIGHT: auto"> </div>
<div style="RIGHT: auto">I am leaning rotamer outlier reduction by Coot. </div>
<div style="RIGHT: auto"> </div>
<div style="RIGHT: auto">After select a rotamer and acception, I find some hydrogens in the outlier rotamer will be isolated from the rotamer, and the rotamer will have new hydrogens at its new position. Is any influence by further refine by phenix?</div>
<div style="RIGHT: auto"> </div>
<div style="RIGHT: auto">After new rotamer acception, I have did the rotamer auto-fit, I find there is a trend on that several oxygens can pack together. How to process this problem?</div>
<div style="RIGHT: auto"> </div>
<div style="RIGHT: auto">After I save the new PDB file by coot after I selected the new rotamers to replace the outlier rotamers, I did a Phenix refine. There is an error message at the start says "Number of atoms with unknown nonbonded energy typensymbol: 2228". What does it mean and how to solve the problem?</div>
<div style="RIGHT: auto"> </div>
<div style="RIGHT: auto">Is any simple method by which I can do the rotamer outlier reduction by Coot? <VAR id=yui-ie-cursor></VAR></div>
<div style="RIGHT: auto"> </div>
<div style="RIGHT: auto">I am looking forward to getting your reply.</div>
<div style="RIGHT: auto"> </div>
<div style="RIGHT: auto">Dialing</div>
<div style="RIGHT: auto"> </div>
<div style="RIGHT: auto"> </div></div></body></html>