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<TITLE>CCI-Apps - Cygwin incompatibility after upgrade</TITLE>
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<P DIR=LTR><SPAN LANG="en-us"><FONT FACE="Calibri">Hi,</FONT></SPAN></P>
<P DIR=LTR><SPAN LANG="en-us"><FONT FACE="Calibri">After upgrading</FONT></SPAN><SPAN LANG="en-us"><FONT FACE="Calibri"> my cci_apps install on Windows from 1.7-718 to 1.7.3-928</FONT></SPAN><SPAN LANG="en-us"><FONT FACE="Calibri"> the interoperability with cygwin is</FONT></SPAN><SPAN LANG="en-us"> <FONT FACE="Calibri">gone.</FONT></SPAN><SPAN LANG="en-us"> <FONT FACE="Calibri">Calling phenix.refine just gives a</FONT></SPAN><SPAN LANG="en-us"> <FONT FACE="Calibri">‘</FONT></SPAN><SPAN LANG="en-us"><FONT FACE="Calibri">Command not found</FONT></SPAN><SPAN LANG="en-us"><FONT FACE="Calibri">’</FONT></SPAN><SPAN LANG="en-us"><FONT FACE="Calibri"> error.</FONT></SPAN><SPAN LANG="en-us"> <FONT FACE="Calibri">Turns out that the</FONT></SPAN><SPAN LANG="en-us"> <FONT FACE="Calibri">little .exe files for each subprogram were replaced by .bat files. That is fine if one just wants to use the DOS CLI, but</FONT></SPAN><SPAN LANG="en-us"> <FONT FACE="Calibri">cygwin is not able to call</FONT></SPAN><SPAN LANG="en-us"> <FONT FACE="Calibri">programs via .bat files as far as I know.</FONT></SPAN><SPAN LANG="en-us"> </SPAN></P>
<P DIR=LTR><SPAN LANG="en-us"><FONT FACE="Calibri">Is there a workaround</FONT></SPAN><SPAN LANG="en-us"><FONT FACE="Calibri"> for this problem besides</FONT></SPAN><SPAN LANG="en-us"><FONT FACE="Calibri"> working in the DOS CLI (yuk)?</FONT></SPAN></P>
<P DIR=LTR><SPAN LANG="en-us"><FONT FACE="Calibri">Thanks </FONT></SPAN></P>
<P DIR=LTR><SPAN LANG="en-us"><FONT FACE="Calibri">Carsten</FONT></SPAN><SPAN LANG="en-us"></SPAN></P>
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