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    Hi Dialing,<br>
    <br>
    you will find the answers here:<br>
    <br>
    <a class="moz-txt-link-freetext" href="http://phenix-online.org/documentation/autobuild.htm">http://phenix-online.org/documentation/autobuild.htm</a><br>
    <br>
    Pavel<br>
    <br>
    On 1/5/12 4:21 PM, Dialing Pretty wrote:
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      <div style="color:#000; background-color:#fff; font-family:times
        new roman, new york, times, serif;font-size:12pt">Dear All,<br>
        <br>
        Today I have tried to use phenix autobuild, I find in the built
        model, some residues in the PDB has been changed to simple
        residues. Will you please introduce to me the theory behind
        this?<br>
        <br>
        In addition, what will be the difference between
        Rebuild-in-place "auto", "true"and "false"? Especially the
        difference between Rebuild-in-place "true"and "false"?<br>
        <br>
        Cheers,<br>
        <br>
        Dialing<br>
        <br>
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      <pre wrap="">_______________________________________________
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