<html><head></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Thanks. Ralf.<div><br><div><div>On Jan 19, 2012, at 4:44 PM, Ralf Grosse-Kunstleve wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><div>Hi Jerome,</div>Run phenix.real_space_correlation without argument for usage instructions. It expects a parameter file on the command line (not a PDB file).<div>Ralf<br><div><br><br><div class="gmail_quote">On Thu, Jan 19, 2012 at 12:46 PM, Jerome Nwachukwu <span dir="ltr"><<a href="mailto:JNwachuk@scripps.edu">JNwachuk@scripps.edu</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Hi:<br>
I am trying to run phenix.real_space_correlation from the command line and received the following error message. Is there a specific syntax i should use?<br>
<br>
Thank you,<br>
-Jerome<br>
<br>
<br>
Syntax error: expected "=", found "Date" (file "3_refine_001.pdb", line 1)<br>
Traceback (most recent call last):<br>
File "/usr/local/phenix-1.7.1-743/cctbx_project/mmtbx/command_line/real_space_correlation.py", line 9, in <module><br>
command_name = "phenix.real_space_correlation")<br>
File "/usr/local/phenix-1.7.1-743/cctbx_project/mmtbx/real_space_correlation.py", line 332, in cmd_run<br>
track_unused_definitions = True)<br>
File "/usr/local/phenix-1.7.1-743/cctbx_project/libtbx/phil/__init__.py", line 1718, in fetch<br>
assert <a href="http://source.name/" target="_blank">source.name</a> == <a href="http://self.name/" target="_blank">self.name</a><br>
AttributeError: 'NoneType' object has no attribute 'name'<br>
_______________________________________________<br>
phenixbb mailing list<br>
<a href="mailto:phenixbb@phenix-online.org">phenixbb@phenix-online.org</a><br>
<a href="http://phenix-online.org/mailman/listinfo/phenixbb" target="_blank">http://phenix-online.org/mailman/listinfo/phenixbb</a><br>
</blockquote></div><br></div></div>
_______________________________________________<br>phenixbb mailing list<br><a href="mailto:phenixbb@phenix-online.org">phenixbb@phenix-online.org</a><br>http://phenix-online.org/mailman/listinfo/phenixbb<br></blockquote></div><br></div></body></html>