<div class="gmail_extra">Dear Gabor,<br><br>The error message shows nothing but part of the alignment file. I tried both Phenix 1.7.3 and 1.7.1.<br><br>Thanks,<br>Fish <br><br><div class="gmail_quote">2012/4/25 Gabor Bunkoczi <span dir="ltr"><<a href="mailto:gb360@cam.ac.uk" target="_blank">gb360@cam.ac.uk</a>></span><br>
<blockquote class="gmail_quote" style="margin:0pt 0pt 0pt 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">Dear Fish,<br>
<br>
can you let me know what the error message is and which Phenix version are you using? Your alignment file looks OK to me.<br>
<br>
Thanks, Gabor<div><div class="h5"><br>
<br>
<br>
On Apr 25 2012, Zhang yu wrote:<br>
<br>
<blockquote class="gmail_quote" style="margin:0pt 0pt 0pt 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
Dear Phenixer,<br>
<br>
When I used Sculptor to generate a new model, there is a error which I<br>
can not figure out. I input a PDB file (*.pdb) and an alignment file<br>
(*.aln).<br>
<br>
The following is the log file (contents in ######). There seems<br>
something wrong with the *.aln file.<br>
#################<br>
Reading PDB file<br>
----------------<br>
<br>
File name: **/**/******/******/**.pdb<br>
Separating solvent from macromolecules...<br>
<br>
Reading alignment files<br>
-----------------------<br>
<br>
1. **/**/**.aln<br>
<br>
#####################<br>
<br>
<br>
<br>
<br>
The following is the content of the alignment file:<br>
<br>
**_** � � �MVYSYTEKKRIRKDFGKRPQVLDVPYLLSI<u></u>QLDSFQKFIEQDPEGQY----GLEAAFRSV<br>
**_** � � �---------<u></u>MEIKRFGRIREVIPLPPLTEIQVESYRRAL<u></u>QADVPPEKRENVGIQAAFRET<br>
� � � � � � � � � � � � � * **: :*: :* * .**::*::: :: * : *::****..<br>
<br>
What is the problem with the alignment file?<br>
<br>
Thank you in advance!<br>
Fish<br>
<br>
</blockquote>
<br></div></div>
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<br>
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� �Addenbrooke's Hospital<br>
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</blockquote></div><br></div>