<html><body><div style="color:#000; background-color:#fff; font-family:arial, helvetica, sans-serif;font-size:10pt"><div><span>Hi all</span></div><div><span>I found that COOT is interchanging the traditional colors (green +ve and red -neg) to (green -ve and red +ve), but if read the map using PHENIX GUI, COOT behaves. May be I did some default option wrong in COOT. But even If open the fofc map , COOT interchanges the red for positive <br></span></div><div><span>density?</span></div><div><br><span></span></div><div><span>Sorry for the inconvenience.<br></span></div><div><span><br></span></div><div><span><br></span></div><br><div style="font-family: arial, helvetica, sans-serif; font-size: 10pt;"> <div style="font-family: times new roman, new york, times, serif; font-size: 12pt;"> <div dir="ltr"> <font face="Arial" size="2"> <hr size="1"> <b><span style="font-weight:bold;">From:</span></b> r n <ramme29@yahoo.com><br> <b><span
style="font-weight: bold;">To:</span></b> "phenixbb@phenix-online.org" <phenixbb@phenix-online.org> <br> <b><span style="font-weight: bold;">Sent:</span></b> Wednesday, May 16, 2012 11:16 AM<br> <b><span style="font-weight: bold;">Subject:</span></b> [phenixbb] annealing omit map<br> </font> </div> <br>
<div id="yiv629849174"><div><div style="color:#000;background-color:#fff;font-family:arial, helvetica, sans-serif;font-size:10pt;"><div>Hi all</div><div><br></div><div>I<span class="yiv629849174tab"> have omitted some region manually from the pdb and did annealing - cartesian using phenix.refinment, the resulting map has density (1.2 sigma) in 2fofc and also</span></div><div><span class="yiv629849174tab">seen 2.8 sigma negative density on the omitted region?</span></div><div><br></div><div><span class="yiv629849174tab">any suggestions?</span></div><div><br><span class="yiv629849174tab"></span></div><div><span class="yiv629849174tab">Rab<br></span></div><div><br></div><div></div></div></div></div><br>_______________________________________________<br>phenixbb mailing list<br><a ymailto="mailto:phenixbb@phenix-online.org" href="mailto:phenixbb@phenix-online.org">phenixbb@phenix-online.org</a><br><a
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