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<div class="moz-cite-prefix">Hi Alex,<br>
<br>
Nigel is the best person to reply, so he may provide more
comments. My understanding is that phenix.metal_coordination
command (or whatever the equivalent click in the GUI is) should
account for symmetry related atoms. If not you can fix it
manually. First create edits file using phenix.metal_coordination
and then add symmetry related bonds as described here:<br>
<br>
<a class="moz-txt-link-freetext" href="http://www.phenix-online.org/documentation/refinement.htm#anch353">http://www.phenix-online.org/documentation/refinement.htm#anch353</a><br>
<br>
Also, could you please send me the PDB file or its portion
containing relevant to your question atoms and I will have a
closer look?<br>
<br>
Pavel<br>
<br>
On 10/16/12 6:33 PM, Alex Theodossis wrote:<br>
</div>
<blockquote
cite="mid:CAKUw-L7mRyumseGpPcgKKApMpnvkyDzSpJ9053c3xV6iZNQpAQ@mail.gmail.com"
type="cite">
<div class="gmail_quote">
<blockquote class="gmail_quote" style="margin:0 0 0
.8ex;border-left:1px #ccc solid;padding-left:1ex">Dear bb,
<div><br>
</div>
<div>I am trying to refine a Zn ion coordinated by symmetry
related residues. To avoid groups being pushed away. I have
use phenix.metal_coordination to</div>
<div>generate the necessary link edits. However only
non-symmetry related interactions are accounted for. Is
there a relevant option I can switch on?</div>
<div>Alternatively, does anyone have an example of the syntax
required to define the necessary symmetry operations in the
elbow.edits file?</div>
<div><br>
</div>
<div>Thanks in advance.</div>
</blockquote>
</div>
<br>
<br>
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</pre>
</blockquote>
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