<html>
<head>
<meta content="text/html; charset=ISO-8859-1"
http-equiv="Content-Type">
</head>
<body bgcolor="#FFFFFF" text="#000000">
Hi, <br>
<br>
I get the same error that autobuild is failing. At least you should
find in
MR_ROSETTA_XXXXXX/GROUP_OF_AUTOBUILD_1/RUN_1/AutoBuild_run_1_/ one
finished autobuild job.<br>
<br>
<br>
In my case also on of the tests failed see below. Tom Terwilliger
answered this to me: <br>
<br>
>> This test error look to me like results of roundoff
differences. I think you can ignore it.<br>
<br>
<meta http-equiv="CONTENT-TYPE" content="text/html;
charset=ISO-8859-1">
<p style="margin-bottom: 0in">Running test_prerefine_no_data<br>
------------------------------------------------------------<br>
Numbers do not match: -0.08947 -0.03928<br>
r {{ 0.86189 0.06488 -0.50292}<br>
{-0.01063 0.99387 0.11000}<br>
{ 0.50698 -0.08947 0.85730}}<br>
---<br>
r {{ 0.84507 0.05441 -0.53188}<br>
{-0.02506 0.99775 0.06225}<br>
{ 0.53407 -0.03928 0.84453}}<br>
------------------------------------------------------------<br>
FAILED<br>
See log files
test_prerefine_no_data/test_prerefine_no_data.log
test_prerefine_no_data/test_prerefine_no_data_current.log<br>
=================================================================</p>
<p style="margin-bottom: 0in">I am running<br>
Rosetta3.4<br>
Phenix 1.8.1-1168<br>
Ubuntu 11.10<br>
lenovo thinkpad w520<br>
Intel® Core™ i7-2630QM CPU @ 2.00GHz × 8 <br>
</p>
<title></title>
<meta name="GENERATOR" content="LibreOffice 3.4 (Unix)">
<style type="text/css">
<!--
@page { margin: 0.79in }
P { margin-bottom: 0.08in }
-->
</style><br>
Sorry, for not helping solving the problem. <br>
<br>
Best georg.<br>
<br>
<div class="moz-cite-prefix">On 11/05/2012 12:13 AM, Julio Lenin
wrote:<br>
</div>
<blockquote
cite="mid:CE89C399-0285-482E-818F-2EAA5005DD68@ucdavis.edu"
type="cite">
<meta http-equiv="Context-Type" content="text/html;
charset=iso-8859-1">
<div>
<div>Hello guys,</div>
<div>
<div><br>
</div>
<div>I am currently trying to setup MR_Rosetta but I am
running into some trouble. When I run the tutorial for
Defensin HNP-3 from the GUI I always get an error during the
... process (see image at this<a moz-do-not-send="true"
href="https://www.dropbox.com/s/207t7hdqt0vbvp7/Screen%20shot%202012-11-02%20at%208.58.47%20AM.png">
dropbox link</a>). I know that my path for phenix and
rosetta are correct since I can run
the phenix_regression.wizards.test_command_line_rosetta_quick
and phenix_regression.wizards.test_command_line_rosetta_quick
test_rosetta_rebuild. If I try to trace down the error, I
can only get the same info that I got from the GUI error
message (vide supra). </div>
<div><br>
</div>
<div>As additional info, here are somme details of my setup:</div>
<div><br>
</div>
<div>MacBookPro 4,1 running OS 10.6.8</div>
<div>Core2Duo 2.5 Ghz</div>
<div>6 Gb RAM</div>
<div>Rosetta 3.2 compiled with flags bin mode=release</div>
<div>Phenix 1.8.1-1168</div>
<div><br>
</div>
<div>And my input settings for the GUI run (<a
moz-do-not-send="true"
href="https://www.dropbox.com/s/77jttri9cxiurms/Screen%20shot%202012-11-01%20at%208.03.06%20PM.png">dropbox</a>)</div>
<div><br>
</div>
<div>Now, this might just be confusing but there was one
command line test that my setup
failed: phenix_regression.wizards.test_command_line_rosetta
test_mr_rosetta</div>
<div><br>
</div>
<div>The error is kinda cryptic (see dropbox <a
moz-do-not-send="true"
href="https://www.dropbox.com/s/x5kejcmsw1aejit/Test-Error.txt">copy
of the error</a>) but it seem to be a discrepancy in the
scoring results not a missing program or any other kind of
misconfiguration. Of course, I might be wrong. </div>
<div><br>
</div>
<div>Any advice?</div>
<div><br>
</div>
<div>Best regards. <br>
<div><br>
</div>
-- <br>
Lenin Domínguez-Ramírez<br>
<br>
"And for all the current and rather silly emphasis on
structural <br>
biology,understanding enzymes means understanding catalysis
and <br>
catalysis is concerned with kinetics, not structure: as
Jeremy <br>
Knowles aptly remarked, studying the photograph of a
racehorse cannot <br>
tell you how fast it can run." <br>
Cornish-Bowden, 1995<br>
</div>
</div>
</div>
<br>
<div>
<span class="Apple-style-span"><span class="Apple-style-span">
<div><span class="Apple-style-span">
<div>Lenin Domínguez-Ramírez, PhD <br>
<br>
"What are we to think of an organism that loses
practically all of its cellular water at ordinary
temperatures and pressures and ceases to metabolize,
but upon being rehydrated resumes all of the
characteristics it previously exhibited?...we should
be reluctant to call such an organism dead (unless we
are willing to entertain the possibility of its
resurrection) because it resumes an active life upon
simple restoration of water."</div>
</span></div>
</span></span>
</div>
<br>
<br>
<fieldset class="mimeAttachmentHeader"></fieldset>
<br>
<pre wrap="">_______________________________________________
phenixbb mailing list
<a class="moz-txt-link-abbreviated" href="mailto:phenixbb@phenix-online.org">phenixbb@phenix-online.org</a>
<a class="moz-txt-link-freetext" href="http://phenix-online.org/mailman/listinfo/phenixbb">http://phenix-online.org/mailman/listinfo/phenixbb</a>
</pre>
</blockquote>
<br>
<pre class="moz-signature" cols="72">--
Mlynek Georg
University of Vienna
Department of Computational and Structural Biology Max F. Perutz Laboratories
Campus Vienna Biocenter 5 level -2
1030 Vienna Austria
e-mail: <a class="moz-txt-link-abbreviated" href="mailto:georg.mlynek@univie.ac.at">georg.mlynek@univie.ac.at</a>
mobil: +43 660 42 195 07
office: +43-1-4277-52263</pre>
</body>
</html>