Yeah, "autobuild has failed" after autobuild finishes (phenix 1.8.1-1160) but I think that's supposed to be the last bit of work anyway. And it certainly doesn't look like the right solution in my case.<div>
<br></div><div>Sincerely,</div><div>Morten Groftehauge</div><div class="gmail_extra"><br><br><div class="gmail_quote">On 4 November 2012 23:48, Georg Mlynek <span dir="ltr"><<a href="mailto:georg.mlynek@univie.ac.at" target="_blank">georg.mlynek@univie.ac.at</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div bgcolor="#FFFFFF" text="#000000">
Hi, <br>
<br>
I get the same error that autobuild is failing. At least you should
find in
MR_ROSETTA_XXXXXX/GROUP_OF_AUTOBUILD_1/RUN_1/AutoBuild_run_1_/ one
finished autobuild job.<br>
<br>
<br>
In my case also on of the tests failed see below. Tom Terwilliger
answered this to me: <br>
<br>
>> This test error look to me like results of roundoff
differences.� I think you can ignore it.<br>
<br>
<p style="margin-bottom:0in">Running test_prerefine_no_data<br>
------------------------------------------------------------<br>
Numbers do not match: -0.08947 -0.03928<br>
r {{ 0.86189 0.06488 -0.50292}<br>
{-0.01063 0.99387 0.11000}<br>
{ 0.50698 -0.08947 0.85730}}<br>
---<br>
r {{ 0.84507 0.05441 -0.53188}<br>
{-0.02506 0.99775 0.06225}<br>
{ 0.53407 -0.03928 0.84453}}<br>
------------------------------------------------------------<br>
FAILED<br>
See log files
test_prerefine_no_data/test_prerefine_no_data.log
test_prerefine_no_data/test_prerefine_no_data_current.log<br>
=================================================================</p>
<p style="margin-bottom:0in">I am running<br>
Rosetta3.4<br>
Phenix 1.8.1-1168<br>
Ubuntu 11.10<br>
lenovo thinkpad w520<br>
Intel� Core� i7-2630QM CPU @ 2.00GHz � 8 <br>
</p>
<br>
Sorry, for not helping solving the problem. <br>
<br>
Best georg.<div><div class="h5"><br>
<br>
<div>On 11/05/2012 12:13 AM, Julio Lenin
wrote:<br>
</div>
</div></div><blockquote type="cite"><div><div class="h5">
<div>
<div>Hello guys,</div>
<div>
<div><br>
</div>
<div>I am currently trying to setup MR_Rosetta but I am
running into some trouble. When I run the tutorial for
Defensin HNP-3 from the GUI I always get an error during the
... process (see image at this<a href="https://www.dropbox.com/s/207t7hdqt0vbvp7/Screen%20shot%202012-11-02%20at%208.58.47%20AM.png" target="_blank">
dropbox link</a>). I know that my path for phenix and
rosetta are correct since I can run
the�phenix_regression.wizards.test_command_line_rosetta_quick
and�phenix_regression.wizards.test_command_line_rosetta_quick
test_rosetta_rebuild. If I try to trace down the error, I
can only get the same info that I got from the GUI error
message (vide supra).�</div>
<div><br>
</div>
<div>As additional info, here are somme details of my setup:</div>
<div><br>
</div>
<div>MacBookPro 4,1 running OS 10.6.8</div>
<div>Core2Duo 2.5 Ghz</div>
<div>6 Gb RAM</div>
<div>Rosetta 3.2 compiled with flags bin mode=release</div>
<div>Phenix 1.8.1-1168</div>
<div><br>
</div>
<div>And my input settings for the GUI run (<a href="https://www.dropbox.com/s/77jttri9cxiurms/Screen%20shot%202012-11-01%20at%208.03.06%20PM.png" target="_blank">dropbox</a>)</div>
<div><br>
</div>
<div>Now, this might just be confusing but there was one
command line test that my setup
failed:�phenix_regression.wizards.test_command_line_rosetta
test_mr_rosetta</div>
<div><br>
</div>
<div>The error is kinda�cryptic�(see dropbox <a href="https://www.dropbox.com/s/x5kejcmsw1aejit/Test-Error.txt" target="_blank">copy
of the error</a>) but it seem to be a discrepancy in the
scoring results not a missing program or any other kind of
misconfiguration. Of course, I might be wrong.�</div>
<div><br>
</div>
<div>Any advice?</div>
<div><br>
</div>
<div>Best regards.�<br>
<div><br>
</div>
-- <br>
Lenin Dom�nguez-Ram�rez<br>
<br>
"And for all the current and rather silly emphasis on
structural�� <br>
biology,understanding enzymes means understanding catalysis
and�� <br>
catalysis is concerned with kinetics, not structure: as
Jeremy�� <br>
Knowles aptly remarked, studying the photograph of a
racehorse cannot�� <br>
tell you how fast it can run." <br>
Cornish-Bowden, 1995<br>
</div>
</div>
</div>
<br>
<div>
<span><span>
<div><span>
<div>Lenin Dom�nguez-Ram�rez, PhD�<br>
<br>
"What are we to think of an organism that loses
practically�all of its cellular water at ordinary
temperatures and�pressures and ceases to metabolize,
but upon being�rehydrated resumes all of the
characteristics it previously�exhibited?...we should
be reluctant to call such an�organism dead (unless we
are willing to entertain the�possibility of its
resurrection) because it resumes an active�life upon
simple restoration of water."</div>
</span></div>
</span></span>
</div>
<br>
<br>
<fieldset></fieldset>
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<br>
<pre cols="72">--
Mlynek Georg
University of Vienna
Department of Computational and Structural Biology Max F. Perutz Laboratories
Campus Vienna Biocenter 5 level -2
1030 Vienna Austria
e-mail: <a href="mailto:georg.mlynek@univie.ac.at" target="_blank">georg.mlynek@univie.ac.at</a>
mobil: <a href="tel:%2B43%20660%2042%20195%2007" value="+436604219507" target="_blank">+43 660 42 195 07</a>
office: <a href="tel:%2B43-1-4277-52263" value="+431427752263" target="_blank">+43-1-4277-52263</a></pre>
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<br></blockquote></div><br><br clear="all"><div><br></div>-- <br>Morten K Gr�ftehauge, PhD�<div>Pohl Group</div><div>Durham University</div><br>
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