Hi Michael,<div><br></div><div>Currently the only way to run the DEN implementation in Phenix on a SGE cluster would be to submit a set of individual jobs with different weight/gamma pairs. Adding more direct SGE support is on our list of things to add, and hopefully that will happen soon.</div>
<div><br></div><div>Jeff</div><div class="gmail_extra"><br><br><div class="gmail_quote">On Tue, Nov 13, 2012 at 6:56 PM, Michael Thompson <span dir="ltr"><<a href="mailto:miket@chem.ucla.edu" target="_blank">miket@chem.ucla.edu</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Hi All,<br>
<br>
Apologies if this is a naive question, but I would like to run DEN refinement and I notice the documentation says that it runs optimally on a machine with at least 30 processor cores. Is there any way to run DEN refinement on a SGE cluster as a batch job using something like run_command="qsub" as can be done with autobuild, etc.?<br>
<br>
Thanks,<br>
<br>
Mike<br>
<br>
<br>
<br>
--<br>
Michael C. Thompson<br>
<br>
Graduate Student<br>
<br>
Biochemistry & Molecular Biology Division<br>
<br>
Department of Chemistry & Biochemistry<br>
<br>
University of California, Los Angeles<br>
<br>
<a href="mailto:miket@chem.ucla.edu">miket@chem.ucla.edu</a><br>
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</blockquote></div><br></div>