Agnes<div><br></div><div>It should link automatically if the criteria as listed in the previous post are followed. You can check it in the .geo file. I'm happy to take a look at it if you send me the model or even just the three residues involved on list.</div>
<div><br></div><div>Nigel</div><div><br></div><div>NB. Any files sent to me will be held in strictest confidence.<br><br><br><div class="gmail_quote">On Wed, Nov 14, 2012 at 10:07 AM, Agnes Thiane Pereira Machado <span dir="ltr"><<a href="mailto:agnes_thiane@hotmail.com" target="_blank">agnes_thiane@hotmail.com</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div><div dir="ltr">
<div dir="ltr"><br><div><div dir="ltr"><div><blockquote><div dir="ltr">Hi�
<br>
�We are trying to refine a protein structure with a (covalently)
<br>
�modified residue. The colosest discussion to our problem is:<br>
<br>
</div>
</blockquote>
����
<a href="http://www.phenix-online.org/pipermail/phenixbb/2010-August/015629.html" target="_blank">http://www.phenix-online.org/pipermail/phenixbb/2010-August/015629.html</a><br>
<blockquote>
<div dir="ltr">�<br>
�We ran:<br>
<br>
<pre>phenix.elbow --residue SSC ourmodel.pdb</pre>
</div>
</blockquote>
<blockquote>
<div dir="ltr">
<pre> And read the due cif file at phenix refinement. The residue by itself is OK, but we were
</pre>
�not able to perform the peptide bond between C and N.<br>
How to complete the .cif file such that it has due restraints
for <br>
�the peptide bond with this modified residue?<br>
<br>
�Agnes<br>
<br>
<br>
</div>
</blockquote>
<br></div>                                            </div></div></div>
                                           </div></div>
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<br></blockquote></div><br><br clear="all"><div><br></div>-- <br>Nigel W. Moriarty<br>Building 64R0246B, Physical Biosciences Division<br>Lawrence Berkeley National Laboratory<br>Berkeley, CA 94720-8235<br>Phone : 510-486-5709� �� Email : NWMoriarty@LBL.gov<br>
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</div>