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Hi Appu,
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<div>You should be able to make a sa-omit map the same was as you make an omit map if you include the keyword <span class="Apple-style-span" style="font-family: monospace; white-space: pre; ">composite_omit_type=sa_omit</span></div>
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<h5>(see <a href="http://phenix-online.org/documentation/autobuild.htm#anch173">http://phenix-online.org/documentation/autobuild.htm#anch173</a>):</h5>
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<h5>Make a SA-omit map around atoms in target.pdb</h5>
<h5><span class="Apple-style-span" style="font-weight: normal; font-size: medium; ">phenix.autobuild data=data.mtz model=coords.pdb omit_box_pdb=target.pdb composite_omit_type=sa_omit</span></h5>
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<div>Let me know if that doesn't do it!</div>
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<div>All the best,</div>
<div>Tom T</div>
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<div>On Dec 7, 2012, at 3:41 AM, Appu kumar wrote:</div>
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<div dir="ltr">Dear Users,<br>
I am refining a enzyme structure with ligand. I want to make the simulated annealing omit map of ligand including with 4 Angestron radius around the ligand. I am seeking your valuable advice to help me out. I know how to make omit map
but i have not come accross making simmulated annealing omit map.<br>
I would appreciate your help. <br>
Thank you<br>
Appu<br>
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