<div style="color:rgb(34,34,34);font-family:arial,sans-serif;font-size:12.727272033691406px;background-color:rgb(255,255,255)"><p class="MsoNormal"><span lang="EN">Hello</span></p><p class="MsoNormal"><span lang="EN">I am trying to solve a structure with P3 Pseudotranslation at 3.5A. The 3.5 dataset have cell of 150,150,200 and 5A dataset have smaller cell 150,150, 100. The data can be scaled in P321, p3221,p3121 with similar rsym (6 (54). Pointless gave me Spacegroups as P3221 or P3121 as soln. I tried Phenix.xtriage it showed me 40% Pseudotranslation peak ( 0,0,0.5) for 3.5A dataset as the c-axis is double that of 5A data. According to cell content analysis it can be dimer in 3.5A and monomer for 5A dataset. So I tried MR with both datasets with homology model build using similar fold protein. I got solns for dimer with LLGs with 1000's in P3221,P3121,P321 with 3.5A dataset. </span><span lang="EN">There were 28 solutions</span></p>
<p><span lang="EN">++++++++++++++++++++++++++++++++++++++++++++++++++</span></p><p><span lang="EN" style="font-size:8pt"> </span><span style="font-size:8pt"> </span><span style="font-size:8pt">SOLU SET</span><span style="font-size:8pt"> </span><span style="font-size:8pt">RFZ=2.0 TFZ=8.2 PAK=0 LLG=259 TFZ==11.3 LLG=1181 TFZ==28.4 (</span><span style="font-size:8pt"> </span><span style="font-size:8pt">SOLU SPAC P 32 2 1)</span></p>
<p><span lang="EN" style="font-size:8pt"> SOLU 6DIM ENSE partial EULER 94.4 2.7 25.5 FRAC -0.07 -1.07 -0.81 BFAC -1.00</span></p><p><span lang="EN" style="font-size:8pt"> Solution #2 annotation (history):</span></p><p>
<span lang="EN" style="font-size:8pt"> SOLU SET RFZ=2.0 TFZ=8.2 PAK=0 LLG=225 LLG=1066 (</span><span style="font-size:8pt"> </span><span style="font-size:8pt">SOLU SPAC P 31 2 1)</span></p><p>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++</p>
<p><span lang="EN">So I refined the solns. of P3221, p321 it refined to 44/54 after that it doesn’t go down. The 0.5 Pseudotranslated molecule can been as symmetry molecule along c-axis. The packing looks very good. I have attached the image of it with native patt map. I deleted one monomer and refined to check the solution I could see clearly see the other molecule. I could see 2n+1 odd reflections to be weak.</span></p>
<p>To check whether two fold can be due to twinning due to pseudotranslation I could not observe it. So I tried to see check whether the it can be P32 merohedral twinning with pseudotranslation with twinning of 0.36 (h,-h-k,-l) from yeates server. I try to use the dimer of P3212 and try for alternative spacegroup which yield me unique soln in P32. I refined the molecule four molecule which yielded me 46/49 and when I apply twinning fraction the r-factor decreases to 40/45.</p>
<p><span lang="EN">Similarly for 4.5A dataset I used dimer of 3.4 dataset dimer which yield me solution in P32 but cannot refine it gets struck for 45/50.I tried to use the dimer with 5A dataset I get unique solu and refine with merohedral twinning the r/freeR goes to 38/57.</span></p>
<p><span lang="EN"> </span></p><p><span lang="EN">How I can check whether it is P32 merohedral twinning with Pseudotranslated or P3221. Also the patterson analysis another peak of height 4% </span>( 0.050, 0.102, 0.495 ) : 4.452 . Is it significant ?</p>
<p>Any suggestion will be helpful</p><p><span lang="EN"> </span></p><p><span lang="EN"></span></p><p><span lang="EN">Thank you</span></p><p><span lang="EN">Abdul</span></p><p></p><p><span lang="EN"> </span></p><p>++++++++++++++++++++++++++++++++++++++++++++++++++</p>
<p> Patterson analyses from phenix.xtriage</p><p> Frac. coord. : 0.000 0.000 0.500</p><p> Distance to origin : 103.157</p><p> Height (origin=100) : 40.427</p><p> p_value(height) : 2.740e-04</p><p>
The full list of Patterson peaks is:</p><p> x y z height p-value(height)</p><p>( 0.000, 0.000, 0.500 ) : 40.427 (2.740e-04)</p><p><span lang="EN">( 0.050, 0.102, 0.495 ) : 4.452 (9.782e-01)</span></p>
<p class="MsoNormal"><span lang="EN">++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++</span></p></div><div class="yj6qo ajU" style="outline:none;padding:10px 0px;width:22px;color:rgb(34,34,34);font-family:arial,sans-serif;font-size:12.727272033691406px;background-color:rgb(255,255,255)">
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</div><div><br></div>-- <br>***********************************************<br>Dr. A.S. Ethayathulla<br>Dept of biophysics<div>AIIMS, new delhi<br>***********************************************
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