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<div class="moz-cite-prefix">I created a virtual machine and did a
brand new Scientific Linux 6.3 (64) installation. After updating
its packages, I installed
phenix-installer-1.8.1-1168-intel-linux-2.6-x86_64-fc3 almost
without a glitch.*<br>
<br>
Following Kay's email I did a clean install of
fcphenix-installer-1.8.1-1168-intel-linux-2.6-x86_64-fc12 and it
also worked beautifully.*<br>
<br>
Thank you a lot Nat, Engin and Kay.<br>
<br>
Cheers,<br>
Davi<br>
<br>
<br>
* - There was the following error message:<br>
running mkfontdir<br>
Couldn't determine weight for Vera.pfa<br>
Couldn't determine weight for VeraMono.pfa<br>
rebuilding font cache<br>
Fontconfig error: Cannot load default config file<br>
fc-cache:
"/usr/local/phenix-1.8.1-1168/build/intel-linux-2.6-x86_64/base/share/fonts":
skipping, no such directory<br>
fc-cache: succeeded<br>
<br>
On 27/01/2013 13:54, Engin Ozkan wrote:<br>
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<div>I just installed yesterday the latest nightly build on our
Scientific Linux 6 (6.3, I believe) machine using the 64-bit FC3
installer. No problems. </div>
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<div>Engin</div>
<div><br>
</div>
<div>
<div style="font-size:75%;color:#575757">Engin Özkan<br>
Garcia Lab, Stanford<br>
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<br>
<br>
-------- Original message --------<br>
From: Nathaniel Echols <a class="moz-txt-link-rfc2396E" href="mailto:nechols@lbl.gov"><nechols@lbl.gov></a> <br>
Date: <br>
To: PHENIX user mailing list <a class="moz-txt-link-rfc2396E" href="mailto:phenixbb@phenix-online.org"><phenixbb@phenix-online.org></a> <br>
Subject: Re: [phenixbb] Unable to install phenix 1.8.1-1168 on
Scientific Linux 6.3 64 bits <br>
<br>
<br>
On Fri, Jan 25, 2013 at 4:15 PM, Davi de Miranda Fonseca<br>
<a class="moz-txt-link-rfc2396E" href="mailto:davi.fonseca@ntnu.no"><davi.fonseca@ntnu.no></a> wrote:<br>
> I installed Scientific Linux 6.3 64 bits, updated everything
and installed a<br>
> couple of things that I think would be necessary. Then I
uncompressed<br>
> phenix-installer-1.8.1-1168-intel-linux-2.6-x86_64-fc3.tar to
/tmp and tried<br>
> to install, however I got some errors. Hence, I installed a
couple more<br>
> things and tried installing again.<br>
<br>
The first thing to try when something like this happens is to
download<br>
one of the other 64-bit installers. In most cases the fc3 build
is<br>
preferred, but there are some newer distributions where an
installer<br>
built on a more recent version of Fedora is preferable. I would
start<br>
with fc8 and work your way up.<br>
<br>
The second thing to try, if all of the binary installers fail, is
to<br>
install from source.<br>
<br>
> ***** And here are the last lines of<br>
>
/tmp/phenix-installer-1.8.1-1168/build-binary/intel-linux-2.6-x86_64/scientifix/log/binary.log:<br>
>...<br>
>
/usr/local/phenix-1.8.1-1168/build/intel-linux-2.6-x86_64/base/bin/python:<br>
> /lib64/libc.so.6: version `GLIBC_2.14' not found (required by<br>
>
/usr/local/phenix-1.8.1-1168/build/intel-linux-2.6-x86_64/base/bin/python)<br>
><br>
> By the way, Scientific linux 6.3 comes with glibc 2.12.<br>
<br>
To be honest I simply don't understand library versioning issues -
the<br>
Fedora 3 machine we build that installer on currently has glibc
2.3,<br>
so I don't know where the GLIBC_2.14 is coming from. I think it
will<br>
be significantly more work to figure out a workaround than trying
the<br>
other installers, though. Unfortunately we do not actually have a<br>
Scientific Linux system here - the closest I could find was CentOS<br>
6.2, and that works okay.<br>
<br>
-Nat<br>
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