We are having exactly the same issue. Loading the "no_fill" map coefficents manually gives a much more sensible map, but the map loaded from the GUI or auto open mtz from coot looks exactly as Mischa is describing it. I can confirm that this happens with 1312 and 1314 development builds.<div>
--Dave<br clear="all"><div><br></div><br><div class="gmail_quote">On Wed, Mar 6, 2013 at 3:24 PM, Pavel Afonine <span dir="ltr"><<a href="mailto:pafonine@lbl.gov" target="_blank">pafonine@lbl.gov</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Hi Mischa,<br>
<br>
an industry user reported the same problem a few days ago but he could not send the data. So I really hope you can send me the files (data and model) so I can reproduce and fix this problem - this would be a huge help. There must be an obscure bug somewhere introduced in recent (after release) versions, but I can't figure out what it is.<br>
<br>
Thanks,<br>
Pavel<div><div><br>
<br>
<br>
On 3/6/13 12:13 PM, Machius, Mischa Christian wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
Y'all,<br>
<br>
Recently, I've run into an issue with the maps from refine. All during the refinement cycles, the autoupdated maps in the associated coot window look great as refinement progresses. However, the final maps look horrible; completely chopped up. It's not a matter of contouring levels; it's essentially unrecognizable, and phenix acknowledges that by stating very low correlation coefficients at the end of the log file.<br>
<br>
I have downloaded the latest builds in an attempt to address B-value issues that were recently discussed and that I am (still) struggling with. The map issue happens with all of them. Is it possible that there is some crossfire from different versions, or any other reason?<br>
<br>
Any help appreciated.<br>
<br>
Cheers,<br>
MM<br>
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