<html><head></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Dear Nat,<div><br></div><div>No LigandFit does not crash but when I try phenix.refine directly from the summary it does not succeed. I added the mtz file to run refinement but it gives some error message and submits bug report.</div><div><br><div>
<span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: -webkit-auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; font-size: medium; "><div>Best regards,</div><div><br></div><div>Bishwa </div><div><br></div><div><br></div></span><br class="Apple-interchange-newline">
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<br><div><div>On Mar 30, 2013, at 11:51 PM, Nathaniel Echols wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><div>On Sat, Mar 30, 2013 at 1:42 PM, <<a href="mailto:bsubedi@btk.fi">bsubedi@btk.fi</a>> wrote:<br><blockquote type="cite">ligand bound. Could it be the reason? As stated earlier I can see the density<br></blockquote><blockquote type="cite">for the ligand. Also, I tried "Ligandfit" and "ligandidentifier" in PHENIX.<br></blockquote><blockquote type="cite">They too failed.<br></blockquote><br>We received your bug reports for the ligand identification - I'll make<br>sure they are passed on to the appropriate person. I didn't see<br>anything for LigandFit though. Does it crash, or does it simply miss<br>the desired location and place the ligand elsewhere? If you're<br>willing to send us the input files (off-list!), we may have a better<br>answer for why it's failing.<br><br>-Nat<br>_______________________________________________<br>phenixbb mailing list<br><a href="mailto:phenixbb@phenix-online.org">phenixbb@phenix-online.org</a><br>http://phenix-online.org/mailman/listinfo/phenixbb<br></div></blockquote></div><br></div></body></html>