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<DIV>Hi,</DIV>
<DIV> </DIV>
<DIV>I had a phosphoserine (SEP) in my structure that is attached in this
message. The data_link file for SEP already exists in the mon_lib
(data_link_SEPC-N) and the corresponding cif_link I used is as follow:</DIV>
<DIV> </DIV>
<DIV>refinement.pdb_interpretation {<BR> apply_cif_link
{<BR> data_link = "SEPC-N"<BR>
residue_selection_1 = "chain C and resname PHE and resid
3"<BR> residue_selection_2 = "chain C and resname SEP and
resid 4"<BR> }<BR> apply_cif_link {<BR> data_link
= "SEPC-N"<BR> residue_selection_1 = "chain C and resname SEP
and resid 4"<BR> residue_selection_2 = "chain C and resname
ARG and resid 5"<BR> }<BR>}</DIV>
<DIV> <BR></DIV>
<DIV>When I run the phenix.refine (my version is phenix-1.8-1069), it said
conflicting bond_simple restraints:</DIV>
<DIV> </DIV>
<DIV> </DIV>
<DIV>Sorry: Conflicting bond_simple restraints:<BR> 1. definition from:
residues: PHE + SEP<BR> 2. definition from: residues: PHE + SEP<BR>
atoms:<BR> "ATOM 3121 C PHE
C 3 .*. C "<BR>
"ATOM 3192 N SEP C 4
.*. N "</DIV>
<DIV> </DIV>
<DIV>Has anyone ever experienced this case before? Any hints are welcome.</DIV>
<DIV> </DIV>
<DIV>Regards</DIV>
<DIV> </DIV>
<DIV>Jianxun Qi</DIV>
<DIV>May 22,2013</DIV>
<DIV> </DIV>
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